Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgattcttaattccatgctaaatggtagaaagtttaatatatggtaaattttcattattaattcatggttttatacatacagGTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGATGAAGGTCTAGGAAAG

Basic information

species Vitis vinifera
transcript Vv00s0531g00050.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77584049|gb|DV221063.1|DV221063
EST:     GTGGTATTTCTGCACAAAATAATGGTGGCTTTGCATGGGAAATAATTCCG                         GTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
genomic: GTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCGgtttgattct ... atacatacagGTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
EST: gi|77586184|gb|DV222186.1|DV222186
EST:     GTGGTATTTCTGCACAAAATAATGGTGGCTTTGCATGGGAAATAATTCCG                         GTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
genomic: GTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCGgtttgattct ... atacatacagGTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
EST: gi|37190107|gb|CF609456.1|CF609456
EST:     GTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCG                         GTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
genomic: GTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCGgtttgattct ... atacatacagGTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
EST: gi|71877133|gb|DT026188.1|DT026188
EST:     GTGGTATTTCTGCACAAAATAATGGTGGCTTTGCATGGGAAATAATTCCG                         GTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
genomic: GTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCGgtttgattct ... atacatacagGTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
EST: gi|30298600|gb|CB975394.1|CB975394
EST:     GCATGGG-AATAATTCCG                         GTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
genomic: GCATGGGAAATAATTCCGgtttgattct ... atacatacagGTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
EST: gi|110376548|gb|EC941608.1|EC941608
EST:     GTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCG                         GTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
genomic: GTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCGgtttgattct ... atacatacagGTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
EST: gi|110378421|gb|EC943552.1|EC943552
EST:     GTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCG                         GTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
genomic: GTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCGgtttgattct ... atacatacagGTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
EST: gi|110395476|gb|EC961142.1|EC961142
EST:     GTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCG                         GTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
genomic: GTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCGgtttgattct ... atacatacagGTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
EST: gi|110361851|gb|EC925352.1|EC925352
EST:     GTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCG                         GTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
genomic: GTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCGgtttgattct ... atacatacagGTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaagtttaatatatggtaaattttcattattaattcatggttttatacatacagGTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGATGAAGGTCTAGGAAAG
                            tattaat  putative branch site (score: 2)
     tttaatatatggtaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgattcttaattccatgctaaatggtagaaagtttaatatatggtaaattttcattattaattcatggttttatacatacagGTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGATGAAGGTCTAGGAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG