Sequence
atgc intronic sequence ATGC exonic sequencegtatgttcattgaaagcgtataattttcttttattttgtttctaattaaatctgtgttgtggatggactattatttgaccatatatatctgaaatttcagtggtaacaaacttttagttttagaattggtgtctgaacactcatgggaagaatttttttcttctataattatgtgattgtagATTTGTGGCATTGAGGCCCCTGAGAATATGCCAAGGTGTATCAATAATTGCTACAACTTGGAAAGTTTCTGGAAGAACTGGCATGCTTCCTTCAACAAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0507g00020.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G042981_T01 (Zea mays), 3'ss of exon 12
gtatgttcattgaaagcgtataattttcttttattttgtttcta-attaaat-ctgtgttgtggatggactattatttgaccatatatatctgaaatttcagtggta--acaaacttttagttttagaattggtgtc-tgaacactcatgggaagaatttttttcttctataattatgtgattgtagATTTGTGGCATTGAGGCCCCTGAGAATATGCCAAGGTGTATCAATAATTGCTACAACTTGGAAAGTTTCTGGAAGAACTGGCATGCTTCCTTCAACAAAT
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gtaattccatattaaattttgcattcaataacactctgatctaatatcgaatgttttatcatgtcttgaaaattatttatcta---atagatagcattataggaacacaactttgttctgatctcagcatctgtttcatgaatattcttgacatgtattaaagc------taaacacatcattgcagGTTGGAGGAGTCGAGACTCCTGAAAACATGCCAAGGTGTATAAATAATTGCCATGATCTGGAGAGTTTCTGGAAAAGCTGGCATGCTTCTTTTAATAAAT
upper sequence: Vv00s0507g00020.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G41940.2 (Glycine max), 3'ss of exon 12
gtatgttcattgaaagcgtataattttcttttattttgtttctaattaaatctgtgttgtggatggactattatttgaccatatatatctgaaatttcagtggtaacaaacttttagttttagaattggtgtctgaacactcatgggaagaatttttttcttctataattatgtgattgtagATTTGTGGCATTGAGGCCCCTGAGAATATGCCAAGGTGTATCAATAATTGCTACAACTTGGAAAGTTTCTGGAAGAACTGGCATGCTTCCTTCAACAAAT
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------------------------------------------------------------------------------------------gtatgtttcttgctcgttaagcata-----tggcataaatgtccaagtacatatttgaagaaagtcgttactttg-aatcatatg-ctgtagATAAACGGAATTGAGGCTCCAGAGAATATGCCAAAATGTATTAATAATTGTCACAACTTGGAAGGCTTTTGGAAAAACTGGCATGCTTCCTTCAACAAGT
upper sequence: Vv00s0507g00020.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G25100.1 (Glycine max), 3'ss of exon 13
gtatgttcattgaaagcgtataattttcttttattttgtttctaattaaatctgtgttgtggatggactattatttgaccatatatatctgaaatttcagtggtaacaaacttttagttttagaattggtgtctgaacactcatgggaagaatttttttcttctataattatgtgattgtagATTTGTGGCATTGAGGCCCCTGAGAATATGCCAAGGTGTATCAATAATTGCTACAACTTGGAAAGTTTCTGGAAGAACTGGCATGCTTCCTTCAACAAAT
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--------------------------------------------------------------------------------------gtatgttacttgctcgttaagca---------tatagcataaatgttcaagtacatatttgaagaaagtcagtactttg-aatcatatg-ttgtagATAAACGGAATTGAGACTCCAGAGAATATGCCAAAATGTATTAATAATTGTCACAACTTGGAAGGCTTTTGGAAAAACTGGCATGCTTCCTTCAACAAGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggtgtctgaacactcatgggaagaatttttttcttctataattatgtgattgtagATTTGTGGCATTGAGGCCCCTGAGAATATGCCAAGGTGTATCAATAATTGCTACAACTTGGAAAGTTTCTGGAAGAACTGGCATGCTTCCTTCAACAAAT
aatttttttcttctat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgttcattgaaagcgtataattttcttttattttgtttctaattaaatctgtgttgtggatggactattatttgaccatatatatctgaaatttcagtggtaacaaacttttagttttagaattggtgtctgaacactcatgggaagaatttttttcttctataattatgtgattgtagATTTGTGGCATTGAGGCCCCTGAGAATATGCCAAGGTGTATCAATAATTGCTACAACTTGGAAAGTTTCTGGAAGAACTGGCATGCTTCCTTCAACAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC