Sequence
atgc intronic sequence ATGC exonic sequence...gtgcatgtctctgagttatctgtttgcatgccacaatcttttgcttggattcttcatctctttatttctattgttgatttttccatgttatctgtggcagTTTGGAATCAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAAAATTCCCGTCTGCATATCCTTGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0441g00010.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G129554_T02 (Zea mays), 3'ss of exon 7
gtgcatgtctctgagttat-ctgtttgcatgcc-acaatcttttgcttggattcttcatctctt-tatt--tctattgttgatttttccatgttatctgtggcagTTTGGAATCAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAAAATTCCCGTCTGCATATCCTTGAG
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-----tgttcacatactatgttgcttctatttcgattctatttttaatgtatgcttcatttgtagtattaacatacttatgatgaatatgctctgctttttgcagTTTGGGATAAGATCTGCAGTTTTGAATGCTGAGTTGCCACAAAATTCCCGACTACATATTATAGAG
upper sequence: Vv00s0441g00010.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G29360.1 (Glycine max), 3'ss of exon 7
--------gtgc-atgtctctgagttatc-tgtttgcatgccacaatcttttgcttggattcttcatctctttatttctattgttgatttttccatgttatctgtggcagTTTGGAATCAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAAAATTCCCGTCTGCATATCCTTGAG
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tttttctactgctatgcttctaggctattatagttgca-gtgggattattttgt----agtcattatttcttcctctctctc----atttccccactttatccttg-tagTTTGGAATCAGATCTGCTGTTTTAAATCCCGAGTTGCCTCAGAATTCTCGTCTCCATATTCTTGAG
upper sequence: Vv00s0441g00010.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G37930.1 (Glycine max), 3'ss of exon 1
-gtgcatgtctctgagttatctgtttgcat--gccacaatc--ttttgcttggattcttcatctctttatttctattgttgatttttccatgttatctgtggcagTTTGGAATCAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAAAATTCCCGTCTGCATATCCTTGAG
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ttttgatttgtattgattttcatactgtatcagttgcagtggaattattttgttgtcattatttcttcctctctctcatt---tcccccat-ttatccttg-cagTTTGGAATTAGATCTGCTGTTTTAAATCCTGAGTTGCCTCAGAATTCTCGCCTCCATATTCTTGAG
upper sequence: Vv00s0441g00010.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT4G34910.1 (Arabidopsis thaliana), 3'ss of exon 7
gtgcatgtctctgagttatctgtttgcatgccacaatcttttgcttggattcttcatctctt-tatttctattgt-tgatttttccatgttatctgtggcagTTTGGAATCAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAAAATTCCCGTCTGCATATCCTTGAG
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----------gtaacttgtgggcacctatacgagcattccgattctaaaaactgtacctgtaataataatattgaattagtcttttgttttgtttcttccagTTTGGAATCAAGTCTGCAATTTTAAACGGGGAATTGCCTCAGAATTCTCGACTTCATATCCTTGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggattcttcatctctttatttctattgttgatttttccatgttatctgtggcagTTTGGAATCAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAAAATTCCCGTCTGCATATCCTTGAG
tgttgat putative branch site (score: 4)
tttatttctattgttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgcatgtctctgagttatctgtttgcatgccacaatcttttgcttggattcttcatctctttatttctattgttgatttttccatgttatctgtggcagTTTGGAATCAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAAAATTCCCGTCTGCATATCCTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- gcatgtc
- - - - - - - - - - tgtttgc
- - - - - - - - - - - - - - -gccacaa
- - - - - - - - - - - - - - - - - - - - -tgcttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgtt