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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgctacccttcttactcctcatgcctctaaagattctcttgatatactatattttacaactgagatagtttttatttttttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTTCTTGATGAAAACATAGCAAGTGCGCAAAGTAGTGAGCAG

Basic information

species Vitis vinifera
transcript Vv00s0323g00040.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0323g00040.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G03320.1 (Glycine max), 3'ss of exon 6
-------gtatgtgctacccttcttactcctcatgcctctaaagattctcttgatatactatattttacaactgagatagtttttatt--tttttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTTCTTGATGAAAACATAGCAAGTGCGCAAAGTAGTGAGCAG
        | |   |  | | | ||  |  |  |   | |     |    ||| |    | || |||| |  |  | |   | | |||  | ||  ||  ||||| ||||||||||||| || |||||| | |||||||| |||||||||||||| |||||||||||||||||||| ||||   |  | |||
gtatgtcatgttcacagctcctttttgttttgttttttttttttttaagtttgttggtttttacttta-agttatgctcactctaatttatcttcaatgcagTTGCTGGAGATGGTTGAAAAGAATGAAATTAATAGATCTTTATTGGCACTTCTAGATGAAAACATAGCAAGTGCACAAAAGGGCAACCAG

upper sequence: Vv00s0323g00040.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA01G42040.1 (Glycine max), 3'ss of exon 6
gtatgtgctacccttcttactcctcatgcctctaaagattctcttgatatactatattttacaactgagatagtttttatt--tttttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTTCTTGATGAAAACATAGCAAGTGCGCAAAGTAGTGAGCAG
   | ||  |   |   | ||| |  |   | |||||  | | ||| | |    ||||||| |  |  | |   | | |||  | ||  ||  ||||| ||||||||||||| || |||||| | |||||||| |||||||||||||  |||||||||||||||||||| ||||   |  | |||
--gtatgtcatgttcactgctcttttt-tttttaaag--tttattggtct----tatttta-agttatgctcactctaatttatcttcaatgcagTTGCTGGAGATGGTTGAAAAGAATGAAATTAATAGATCTTTATTGGCACTTCAAGATGAAAACATAGCAAGTGCACAAAAGGGCAACCAG

upper sequence: Vv00s0323g00040.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G62780.1 (Arabidopsis thaliana), 3'ss of exon 6
gtatgtgctacccttcttactcctcatgcctctaaagattctcttgatatactatattttacaactgagatagttt-----ttatttttttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTTCTTGATGAAAACATAGCAAGTGCGCAAAGTAGTGAGCAG
|||||||  ||  | |  |      |  |    ||| ||| | |    ||   ||    |     ||||| | |||     || || |||| ||  |||||||||| ||||| ||||||||  || |||| ||||| || ||||||||||| || ||||||||||| | |||  | |   |  | |||
gtatgtgacactttacccat-----aaacacaaaaacattttatgatgatttcatgagatgatcttgagacattttgttgattcttcttttgatacagTTGTTGGATATGGTGGAGAAAAACCAAATCAACAGATCTTTGTTGGCACTTCTCGACGAAAACATAGCCAATGCATACAAAGGAAACCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351045677|gb|FQ440862.1|FQ440862
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|18458960|gb|BM437238.1|BM437238
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|28961923|gb|CB340981.1|CB340981
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGG-AGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACT
EST: gi|352782030|gb|FQ469328.1|FQ469328
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|351013034|gb|FQ433761.1|FQ433761
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|351024091|gb|FQ423514.1|FQ423514
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|28964858|gb|CB343891.1|CB343891
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|110428331|gb|EC994800.1|EC994800
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|349825131|gb|FQ415678.1|FQ415678
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|28964910|gb|CB343943.1|CB343943
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|110372937|gb|EC937134.1|EC937134
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|351052007|gb|FQ450698.1|FQ450698
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|351023061|gb|FQ430936.1|FQ430936
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|351014068|gb|FQ434220.1|FQ434220
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAAATGA-CTCAATAGATCCTTATTGGCACT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAA-TGAACTCAATAGATCCTTATTGGCACT
EST: gi|351034821|gb|FQ458178.1|FQ458178
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGCCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|349810037|gb|FQ398662.1|FQ398662
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|349818743|gb|FQ409277.1|FQ409277
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|349833110|gb|FQ416488.1|FQ416488
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|26261480|gb|CA812543.1|CA812543
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|351035150|gb|FQ458507.1|FQ458507
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|351044715|gb|FQ443246.1|FQ443246
EST:     CAAAGGAAGGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|110427789|gb|EC994240.1|EC994240
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|351024906|gb|FQ433323.1|FQ433323
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGNNNNNNNTGAACTCAATAGATCCTTATTGGGACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|351051811|gb|FQ455225.1|FQ455225
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|32248420|gb|CD714239.1|CD714239
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|32244984|gb|CD710803.1|CD710803
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|349832594|gb|FQ421952.1|FQ421952
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTCGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|351043470|gb|FQ428942.1|FQ428942
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|349823321|gb|FQ402520.1|FQ402520
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|351014302|gb|FQ437304.1|FQ437304
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|352769266|gb|FQ471415.1|FQ471415
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAACAACA                         TTGTTGGAGAAGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|110699852|gb|EE077230.1|EE077230
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|351013822|gb|FQ433974.1|FQ433974
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGGAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|351017299|gb|FQ435651.1|FQ435651
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|351044247|gb|FQ447601.1|FQ447601
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|110684606|gb|EE062073.1|EE062073
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|351025451|gb|FQ435143.1|FQ435143
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|351045771|gb|FQ440956.1|FQ440956
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|349825132|gb|FQ415679.1|FQ415679
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|51050325|gb|CO818492.1|CO818492
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|349830964|gb|FQ418248.1|FQ418248
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
EST: gi|18459240|gb|BM437518.1|BM437518
EST:     CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACA                         TTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT
genomic: CAAAGGAAAGCCTAACCAAAATTTTGACTTCCAAGGATGTAAAAGCAACAgtatgtgcta ... tttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctcttgatatactatattttacaactgagatagtttttatttttttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTTCTTGATGAAAACATAGCAAGTGCGCAAAGTAGTGAGCAG
   tcttgat  putative branch site (score: 4)
                                   tttttatttttttcat  putative PPT
              tatattttacaactga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtgctacccttcttactcctcatgcctctaaagattctcttgatatactatattttacaactgagatagtttttatttttttcatttagTTGTTGGAGATGGTTGAGAAAAATGAACTCAATAGATCCTTATTGGCACTTCTTGATGAAAACATAGCAAGTGCGCAAAGTAGTGAGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG