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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcttcttttccttctagtatgcattcttgaaaaagatttatcgatgaactaggaaaatcactgcttcattgtcacttcttcaagcttacatggttttctgttttttactgcctcaatagCTAGAGTTTGGGGACTTCTAGCTCTTCACCTGGTTGATGATCCTATTTTACCTTTCAACTATGTCTCTTACACAGAACAATTATGGGTAGGCATCTGTTT

Basic information

species Vitis vinifera
transcript Vv00s0285g00060.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0285g00060.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA03G36430.1 (Glycine max), 3'ss of exon 6
gttagcttcttttccttctagtatg-cattcttgaaaaagatttatcgatgaactaggaaaatcactgcttcattgtcacttcttcaagcttacatggttttctgttttttactgcctcaatagCTAGAGTTTGGGGACTTCTAGCTCTTCACCTGGTTGATGATCCTATTTTACCTTTCAACTATGTCTCTTACACAGAACAATTATGGGTAGGCATCTGTTT
||||| ||  | |  |  | |  |   ||  || | ||   | |||        |  |  ||    |  | ||| ||  |      ||| |   |   ||||||||| |||  ||    | |  |  |||||||||| ||||||||||||||| ||| ||||||||| ||| | |||||||| || || || ||  || |  | ||   |              
gttagatttctcttttaattgcttaatatggtttacaagtctctatt------tttagtgaactgttaatccat-gtggcagtcataagatgtaac--ttttctgttctttgttgtaatagTTACAGGAGTTTGGGGGCTTCTAGCTCTTCACTTGGCTGATGATCCCATTCTTCCTTTCAATTACGTTTCATATGCAAATGAGTTGCAG--------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattgtcacttcttcaagcttacatggttttctgttttttactgcctcaatagCTAGAGTTTGGGGACTTCTAGCTCTTCACCTGGTTGATGATCCTATTTTACCTTTCAACTATGTCTCTTACACAGAACAATTATGGGTAGGCATCTGTTT
                  agcttac  putative branch site (score: 3)
                             ttttctgttttttact  putative PPT
                             ttttctgtttttta  TA-rich tract