Sequence
atgc intronic sequence ATGC exonic sequence...gaatgttcttattgatcaggggttattttctgaaattttgtaaggtaagttccatatttgaatatgcatctaatttttatcggacttttttctatggcagGTCAACAATTTCTTCCAATAATGTAAACCAGTTCTCAAGATTTTTTAAAGATATGAAAGTTCTTTTGTGTGATAAGGTGTATGTTGTAAATGTTCTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0282g00040.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G06880.1 (Glycine max), 3'ss of exon 8
gaatgttcttattgatcaggggttattttctgaaattttgtaaggtaagttccatatt--tgaatatgcatctaatttttatcggactttt-ttctatggcagGTCAACAATTTCTTCCAATAATGTAAACCAGTTCTCAAGATTTTTTAAAGATATGAAAGTTCTTTTGTGTGATAAGGTGTATGTTGTAAATGTTCTAG
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-aatttctttttccctctattg--atttattgtatgtatctgacatcactcactgactgatttatataaaattatattttgtttgtttcctgtcttattttagGTCAAAA----TGTGCAATATT--AGATCAGTTCTCAAGATTTCTGAAAGACATGAAAGAACTTTTGCTTGATAAGGTTTTTGTTGTCAATGTTCTAG
upper sequence: Vv00s0282g00040.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA07G30370.1 (Glycine max), 3'ss of exon 9
gaatgttcttattgatcaggggttattttc--tgaaattttgtaag-gtaagttccatat-ttgaatatgcatctaatttttatcggactttt-ttctatggcagGTCAACAATTTCTTCCAATAATGTAAACCAGTTCTCAAGATTTTTTAAAGATATGAAAGTTCTTTTGTGTGATAAGGTGTATGTTGTAAATGTTCTAG
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-----tctaaactaatttctttttccctctattgatttgttgtatgtgtctgcatcacttactgactggttaattatattttgtttgattcctgtcttattttagGTCAAAA----TGCACAATATT--AGATCAGTTCTCAAGATTTCTGAAAGACATGAAAGAACTTTTGCTTGATAAAGTTTTTGTTGTCAATGTTCTAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71871367|gb|DT020422.1|DT020422EST: TTGTCCATGAAGGCAGATTCCAAATATGAAAGCTCAAATACACCTTCCGG GTCAACAATTTCTTCCAATAATGTAAACCAGTTCTCAAGATTTTTTAAAGA
genomic: TTGTCCATGAAGGCAGATTCCAAATATCAAAGCTCAAATACACCTTCCGGgtgagttttc ... tctatggcagGTCAACAATTTCTTCCAATAATGTAAACCAGTTCTCAAGATTTTTTAAAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taagttccatatttgaatatgcatctaatttttatcggacttttttctatggcagGTCAACAATTTCTTCCAATAATGTAAACCAGTTCTCAAGATTTTTTAAAGATATGAAAGTTCTTTTGTGTGATAAGGTGTATGTTGTAAATGTTCTAG
atctaat putative branch site (score: 3)
cttttttctat putative PPT
atatttgaatatgcat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaatgttcttattgatcaggggttattttctgaaattttgtaaggtaagttccatatttgaatatgcatctaatttttatcggacttttttctatggcagGTCAACAATTTCTTCCAATAATGTAAACCAGTTCTCAAGATTTTTTAAAGATATGAAAGTTCTTTTGTGTGATAAGGTGTATGTTGTAAATGTTCTAG
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