1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cccattttgcttgattaaaaacgctgtctaaatgttaaaaaatttatttgcaaagtttatgattagactgctgagtaaatatttgtgttgcttggttcagTTCATCCGATTCTGCATTTGGGATGGACATGTTCAAGAGGATGCTCCAAAGTGGGCATCCAACCATGCTCAGCTAATTATCCGAGCTCAAAAGCTGAATC
species | Vitis vinifera |
transcript | Vv00s0253g00070.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATACCAAGTGCAGAGGGTGTCTCATTTCCCTATGAGATCACTATCCCAAG TTCATCCGATTCTGCATTTGGGATGGACATGTTCAAGAGGATGCTCCAAAGEST: gi|32265156|gb|CD716745.1|CD716745
genomic: ATACCAAGTGCAGAGGGTGTCTCATTTCCCTATGAGATCACTATCCCAAGgtgagcctat ... cttggttcagTTCATCCGATTCTGCATTTGGGATGGACATGTTCAAGAGGATGCTCCAAAG
EST: ATACCAAGTGCAGAGGGTGTCTCATTTCCCTATGAGATCACTATCCCAAG TTCATCCGATTCTGCATTTGGGATGGACATGTTCAAGAGGATGCTCCAAAGEST: gi|30131971|gb|CB917310.1|CB917310
genomic: ATACCAAGTGCAGAGGGTGTCTCATTTCCCTATGAGATCACTATCCCAAGgtgagcctat ... cttggttcagTTCATCCGATTCTGCATTTGGGATGGACATGTTCAAGAGGATGCTCCAAAG
EST: ATACCAAGTGCAGAGGGTGTCTCATTTCCCTATGAGATCACTATCCCAAG TTCATCCGATTCTGCATTTGGGATGGACATGTTCAAGAGGATGCTCCAAAGEST: gi|110364317|gb|EC923858.1|EC923858
genomic: ATACCAAGTGCAGAGGGTGTCTCATTTCCCTATGAGATCACTATCCCAAGgtgagcctat ... cttggttcagTTCATCCGATTCTGCATTTGGGATGGACATGTTCAAGAGGATGCTCCAAAG
EST: ATACCAAGTGCAGAGGGTGTCTCATTTCCCTATGAGATCACTATCCCAAG TTCATCCGATTCTGCATTTGGGATGGACATGTTCAAGAGGATGCTCCAAAGEST: gi|27582678|gb|CB005373.1|CB005373
genomic: ATACCAAGTGCAGAGGGTGTCTCATTTCCCTATGAGATCACTATCCCAAGgtgagcctat ... cttggttcagTTCATCCGATTCTGCATTTGGGATGGACATGTTCAAGAGGATGCTCCAAAG
EST: ATACCAAGTGCAGAGGGTGTCTCATTTCCCTATGAGATCACTATCCCAAG TTCATCCGATTCTGCATTTGGGATGGACATGTTCAAGAGGATGCTCCAAAGEST: gi|110418686|gb|EC984850.1|EC984850
genomic: ATACCAAGTGCAGAGGGTGTCTCATTTCCCTATGAGATCACTATCCCAAGgtgagcctat ... cttggttcagTTCATCCGATTCTGCATTTGGGATGGACATGTTCAAGAGGATGCTCCAAAG
EST: TTTCCCTATGAGATCACTATCCCAAG TTCGTCCGATTCTGCATTTGGGATGGACATGTTCAAGAGGATGCTCCAAAGEST: gi|30326794|gb|CD010056.1|CD010056
genomic: TTTCCCTATGAGATCACTATCCCAAGgtgagcctat ... cttggttcagTTCATCCGATTCTGCATTTGGGATGGACATGTTCAAGAGGATGCTCCAAAG
EST: ATACCAAGTGCAGAGGGTGTCTCATTTCCCTATGAGATCACTATCCCAAG TTCATCCGATTCTGCATTTGGGATGGACATGTTCAAGAGGATGCTCCAAAGEST: gi|110361387|gb|EC924855.1|EC924855
genomic: ATACCAAGTGCAGAGGGTGTCTCATTTCCCTATGAGATCACTATCCCAAGgtgagcctat ... cttggttcagTTCATCCGATTCTGCATTTGGGATGGACATGTTCAAGAGGATGCTCCAAAG
EST: ATACCAAGTGCAGAGGGTGTCTCATTTCCCTATGAGATCACTATCCCAAG TTCATCCGATTCTGCATTTGGGATGGACATGTTCAAGAGGATGCTCCAAAG
genomic: ATACCAAGTGCAGAGGGTGTCTCATTTCCCTATGAGATCACTATCCCAAGgtgagcctat ... cttggttcagTTCATCCGATTCTGCATTTGGGATGGACATGTTCAAGAGGATGCTCCAAAG
atttgcaaagtttatgattagactgctgagtaaatatttgtgttgcttggttcagTTCATCCGATTCTGCATTTGGGATGGACATGTTCAAGAGGATGCTCCAAAGTGGGCATCCAACCATGCTCAGCTAATTATCCGAGCTCAAAAGCTGAATC
aaagtttatgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccattttgcttgattaaaaacgctgtctaaatgttaaaaaatttatttgcaaagtttatgattagactgctgagtaaatatttgtgttgcttggttcagTTCATCCGATTCTGCATTTGGGATGGACATGTTCAAGAGGATGCTCCAAAGTGGGCATCCAACCATGCTCAGCTAATTATCCGAGCTCAAAAGCTGAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
cccattt
- - - -tgcttga
- - - - - - - -taaaaac
- - - - - - - - - - - - - - - - - -taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgctg