Sequence
atgc intronic sequence ATGC exonic sequencegtttgtaccttccaccaaaaaaggggagaatggaactgagaacttatttaaaattcacaaaaaaaattgaaataatgctttcattttttgggttcatgatatgaaaccattttcatgacagGTTTGAAGCTGATATGCTAGCATTTTCTGGATGCTACTATGGTGGGGGTGAAAAGGAGAGATATGAGCTTGGTGAAATAAGGAAACGCTGGGCAACATTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os04g46570.1 (Oryza sativa), 3'ss of exon 6
----------gtttgtaccttcca--ccaaaaaaggggagaatggaactgagaacttatttaaaattcacaaaaaaaattgaaataatgctttcattttttgggttcatgatatgaaaccattttcatgacagGTTTGAAGCTGATATGCTAGCATTTTCTGGATGCTACTATGGTGGGGGTGAAAAGGAGAGATATGAGCTTGGTGAAATAAGGAAACGCTGGGCAACATTA
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gtatgcttttacttgtttcttttgatttagtttctttgaaaatggtactactgagtttttt----tcccctgaaagtactcatatggagtgtt--ttgaataacctctttacttttgcttgactcct---cagGTTTGAGCCTGACATGCTTGCATTTTCTGGTTGTTACTATGGTGGTGGTGATAAAGAACGGAGGGAGTTAGGTGAAATTAGGAAAAGATGGGATACACTA
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G101181_T02 (Zea mays), 3'ss of exon 6
gtttgtaccttccaccaaaaaaggggagaatggaactgagaacttatttaaaatt-cacaaaaaaaattgaaataatgctttcattttttgggttcatgatatgaa-------accattttcatgacagGTTTGAAGCTGATATGCTAGCATTTTCTGGATGCTACTATGGTGGGGGTGAAAAGGAGAGATATGAGCTTGGTGAAATAAGGAAACGCTGGGCAACATTA
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----------------------gtaaactctggttgtttatgataattcaatgctgccttttgataattgaagttatgattgaccatgaaagtaaaaaaaaatgaacataactgttgtttgtttatcagGTTTGAACCTGACATGCTTGCATTTTCTGGCTGTTACTACGGTGGCGGTGAAAAAGAAAGAAAGGAATTGGGTGAAATTAGGAAACGATGGGATACATTA
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G03640.1 (Glycine max), 3'ss of exon 7
gtttgtaccttccaccaaaaaaggggagaatggaactgagaacttatttaaaattcacaaaaaaaattgaaataatgctttcattttttgggttcatgatatgaaaccattttcatgacagGTTTGAAGCTGATATGCTAGCATTTTCTGGATGCTACTATGGTGGGGGTGAAAAGGAGAGATATGAGCTTGGTGAAATAAGGAAACGCTGGGCAACATTA
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-----------------caaaagtatgaaatagaataaattacata---agagtttgggaggcgaggaggatccatgttaattgacactaaccacagaaatcatgattggttt-atgacagGTTTGAACCAGATATGCTAGCATTTTCAGGTTGTTATTTTGGTGGGGGAGAAAAAGAGAGACGTGAGCTTGGTGAAATCAGAAAAAGGTGGACAACATTA
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA01G41740.1 (Glycine max), 3'ss of exon 6
gtttgtaccttccaccaaaaaaggggagaatggaactgagaacttatttaaaattcacaaaaaaaattgaaataatgctttcattttttgggttcatgatatgaaaccattttcatgacagGTTTGAAGCTGATATGCTAGCATTTTCTGGATGCTACTATGGTGGGGGTGAAAAGGAGAGATATGAGCTTGGTGAAATAAGGAAACGCTGGGCAACATTA
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-----------------ctaaagtatgaaatagaataaattacata---agagcttgggaagcaaggaggatccatgttaattgccactaacaacagaaatcgtgattggttt-acgacagGTTTGAACCAGATATGCTAGCATTTTCAGGTTGTTATTTTGGTGGGGGAGAAAAGGAGAGACGCGAGCTTGGTGAAATCAGAAAAAGGTGGACAACATTA
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA05G04720.1 (Glycine max), 3'ss of exon 6
gtttgtaccttccaccaaaaaaggggagaatggaactgagaacttatttaaaattcacaaaaaaaattgaaataatgctttcattttttgggttcatgatatgaaaccattttcatgacagGTTTGAAGCTGATATGCTAGCATTTTCTGGATGCTACTATGGTGGGGGTGAAAAGGAGAGATATGAGCTTGGTGAAATAAGGAAACGCTGGGCAACATTA
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---------ttccaacacaattta--ataatagctgtgtgg-caggtttgcgctatagccattgcttctataaaatgttaaggatctcataattcataatga---------ttcatggcagGTTTGAGTCAGATATGCTGGCATTTTCAGGTTGTTATTTTGGTGGTGGTGAAAAAGAAAGACGCGAGCTTGGTGAAATCAGGAAAAGGTGGACAACGTTG
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT4G16650.1 (Arabidopsis thaliana), 3'ss of exon 6
gtttgt-accttccaccaaaaa-----aggggagaatggaactgagaacttatttaaaattcacaa--aaaaaattgaaataatgctttcattttttgggttcatgatatgaaaccattttcatga----cagGTTTGAAGCTGATATGCTAGCATTTTCTGGATGCTACTATGGTGGGGGTGAAAAGGAGAGATATGAGCTTGGTGAAATAAGGAAACGCTGGGCAACATTA
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gtttattaagtttctttaacaacccatattagattgtgttccctgatttttgcttaatagtctcaatcatgttataagcatgacatcttcatctcc-atgttatttatgtaaccatacttttacgaactgcagATTTGAGCCTGACATGCTAGCCTTTTCTGGTTGTGACTTTGGTGGGGGTGAAAAAGAGAGAGCTGAGCTAGCAGAAATAAGAAAACGATGGGACACATTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110731196|gb|EE109144.1|EE109144EST: GTATTAAGAATGCGAAAGATGACAAATCGTTTTATTGCAGTTCACTTGAG GTTTGAAGCTGATATGCTAGCATTTTCTGGATGCTACTATGGTGGGGGTGA
genomic: GTATTAAGAATGCGAAAGATGACAAATCGTTTTATTGCAGTTCACTTGAGgtttgtacct ... ttcatgacagGTTTGAAGCTGATATGCTAGCATTTTCTGGATGCTACTATGGTGGGGGTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgaaataatgctttcattttttgggttcatgatatgaaaccattttcatgacagGTTTGAAGCTGATATGCTAGCATTTTCTGGATGCTACTATGGTGGGGGTGAAAAGGAGAGATATGAGCTTGGTGAAATAAGGAAACGCTGGGCAACATTA
ccattttc CT-rich tract
tttcatttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgtaccttccaccaaaaaaggggagaatggaactgagaacttatttaaaattcacaaaaaaaattgaaataatgctttcattttttgggttcatgatatgaaaccattttcatgacagGTTTGAAGCTGATATGCTAGCATTTTCTGGATGCTACTATGGTGGGGGTGAAAAGGAGAGATATGAGCTTGGTGAAATAAGGAAACGCTGGGCAACATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA