Sequence
atgc intronic sequence ATGC exonic sequencegtatgaacttataatgttttttttggagaaaacatctccttcataggtttactgaaatactgttttatcagGTAAGTATGGCAACCAAAATGGCTACTGTTGATAAGGCAGAAGAGCTTCTAGAAAAGCTTCGCAGTGCTTCATGGGATGCTGCAGTACAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA01G02480.1 (Glycine max), 3'ss of exon 6
gtatgaacttataatgttttttttggagaaaacatctccttcataggtt--tactgaaatactgt--------tttatcagGTAAGTATGGCAACCAAAATGGCTACTGTTGATAAGGCAGAAGAGCTTCTAGAAAAGCTTCGCAGTGCTTCATGGGATGCTGCAGTACAAG
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gtatga-ttcata-tgctatatt--aagaatacaatttagttataggttgctaatgacctaatgtataatcgatctttcagGTTAGCATGGCAACCAAAATGGCAACTGTTGATAAAGCAGAAGAACTTCTTGAAAAGCTTCGCAGGTCTTCCTGGGATGCTGCAGTGCAAG
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA09G33490.1 (Glycine max), 3'ss of exon 6
gtatgaacttataatgttttttttggagaaaacatctccttcataggtt----------tactgaaatactgttttatcagGTAAGTATGGCAACCAAAATGGCTACTGTTGATAAGGCAGAAGAGCTTCTAGAAAAGCTTCGCAGTGCTTCATGGGATGCTGCAGTACAAG
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gtatga-ttcata-tgctatatt--aagaatacaatccggttgtagattgctaatgacctaatgtataattgatctttcagGTTAGCATGGCAACCAAAATGGCAACTGTTGATAAAGCAGAAGAACTTCTTGAAAAGCTTCGCAGGGCTTCCTGGGATCCTGCAGTGCAAG
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT5G10540.1 (Arabidopsis thaliana), 3'ss of exon 6
---gtatgaacttataatgttttttttggagaaaacatctccttcataggtttactgaaatactgttttatcagGTAAGTATGGCAACCAAAATGGCTACTGTTGATAAGGCAGAAGAGCTTCTAGAAAAGCTTCGCAGTGCTTCATGGGATGCTGCAGTACAAG
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gtattatagtctactaagtcaacttactctcctttactcatgggcttaaatttaatatcattctccttgtccagGTAAGCATGGCCACGAAAATGGCTACTGTGGAGAAAGCAGATGAGCTACTAGAAAAGCTTCGCAGTGCTTCATGGGATCCGGCTGTTCAAG
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT5G65620.1 (Arabidopsis thaliana), 3'ss of exon 6
------gtatgaactta--taatgttttttttggagaaaacatctccttcataggtttactgaaa--tactgttttatcagGTAAGTATGGCAACCAAAATGGCTACTGTTGATAAGGCAGAAGAGCTTCTAGAAAAGCTTCGCAGTGCTTCATGGGATGCTGCAGTACAAG
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gtagagtcatcaacctaagtaaaactgttcttt-------tttctttctaattggcttaatgcgactttctactgttctagGTAAGCATGGCTATGAAAATGGCTACTGTTGAGAAAGCAGCAGAGCTTTTAGAGAAGCTTCGTAGTGCATCCTGGGATGCGGCTGTTCAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110723244|gb|EE100338.1|EE100338EST: AGCTTAGGTTGGAAAAGGCTAAGCTTCTTGGTTACAGTAACTATGCAGAG GTAAGTATGGCAACCAAAATGGCTACTGTTGATAAAGCAGAAGAGCTTCTA
genomic: AGCTTAGGTTGGAAAAGGCTAAGCTTCTTGGTTACAGTAACTATGCAGAGgtatgaactt ... gttttatcagGTAAGTATGGCAACCAAAATGGCTACTGTTGATAAGGCAGAAGAGCTTCTA
EST:
gi|110732181|gb|EE107245.1|EE107245EST: AGCTTAGGTTGGAAAAGGCTAAGCTTCTTGGTTACAGTAACTATGCAGAG GTAAGTATGGCAACCAAAATGGCTACTGTTGATAAGGCAGAAGAGCTTCTA
genomic: AGCTTAGGTTGGAAAAGGCTAAGCTTCTTGGTTACAGTAACTATGCAGAGgtatgaactt ... gttttatcagGTAAGTATGGCAACCAAAATGGCTACTGTTGATAAGGCAGAAGAGCTTCTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttttttggagaaaacatctccttcataggtttactgaaatactgttttatcagGTAAGTATGGCAACCAAAATGGCTACTGTTGATAAGGCAGAAGAGCTTCTAGAAAAGCTTCGCAGTGCTTCATGGGATGCTGCAGTACAAG
ctgtttt CT-rich tract
aaatactgttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgaacttataatgttttttttggagaaaacatctccttcataggtttactgaaatactgttttatcagGTAAGTATGGCAACCAAAATGGCTACTGTTGATAAGGCAGAAGAGCTTCTAGAAAAGCTTCGCAGTGCTTCATGGGATGCTGCAGTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG