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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctatcattatgatttttttaatgcttgctctaattccttctaggaatcgcctttcatttcctgggaagtctaattacatgttcttttctttggcttgcagTGCCGTAAACGACGTATGAAGGTGGCAATAGTCGGTGTTCCAAAAACCATAGACAACGATATTCTACATATGGATAAAACTTTTGGTTTTGATACTGCTG

Basic information

species Vitis vinifera
transcript Vv00s0199g00240.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0199g00240.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA18G21720.1 (Glycine max), 3'ss of exon 8
----ctatca-ttatgatttttttaatgcttgctctaattccttctaggaatcgcctttcatttcctgggaagtctaattacatgttcttttctttggcttgcagTGCCGTAAACGACGTATGAAGGTGGCAATAGTCGGTGTTCCAAAAACCATAGACAACGATATTCTACATATGGATAAAACTTTTGGTTTTGATACTGCTG
     | | | |||||  |  | |  |      | ||     |  |||  || |  ||| | ||  | ||      |||||||  || |||| ||   | || ||||||| ||| ||||  |||||||  |  || | ||||| || ||||| |||||||| |||||| ||   ||||| ||||||||||| |||||||||||||
tgaaatgtgaattatgtgtgatattgtaggctgtttagaaattcttag--atggtgttttaatttttaggcttctcaattacagatttttttttt---cctgtagTGCCGCAAAAGACGCCTGAAGGTATCTGTAATTGGTGTGCCCAAAACTATAGACAATGATATTTTATTGATGGACAAAACTTTTGGGTTTGATACTGCTG

upper sequence: Vv00s0199g00240.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G38450.1 (Glycine max), 3'ss of exon 7
-----ctatcattatgatttttttaatgcttgctctaattccttctaggaatcgcctttcatttcctgggaagtctaattacatgttcttttctttggcttgcagTGCCGTAAACGACGTATGAAGGTGGCAATAGTCGGTGTTCCAAAAACCATAGACAACGATATTCTACATATGGATAAAACTTTTGGTTTTGATACTGCTG
        |  | |  | |||||| ||| | | | |||||   | ||||  |  | |   | ||  |||    | |    || || | |||  |||  |||| ||||||| ||| ||||  |||||||  |  || | || || || ||||| |||||||| |||||| ||   ||||| ||||||||||| |||||||||||||
attgtaggtgttcagcaattttttgatggt-gttttaatt---tttaggcttgtcatgctaatttgtggctcatttgtgaac-tgatatttcttttttcttgtagTGCCGCAAAAGACGGCTGAAGGTATCTGTAATTGGCGTGCCCAAAACTATAGACAATGATATTTTATTGATGGACAAAACTTTTGGCTTTGATACTGCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcgcctttcatttcctgggaagtctaattacatgttcttttctttggcttgcagTGCCGTAAACGACGTATGAAGGTGGCAATAGTCGGTGTTCCAAAAACCATAGACAACGATATTCTACATATGGATAAAACTTTTGGTTTTGATACTGCTG
                      gtctaat  putative branch site (score: 3)
                                   ttcttttctttggctt  putative PPT
                         taattacat  TA-rich tract