Sequence
atgc intronic sequence ATGC exonic sequencegtgctcaatttattgtttcctattgttagacatttctttgtttgcttgaggaaattgctgatgtagaattacataatgatgccaggcatcaagtgttctgatatatgtattttcattttgctgttagAAAAGAGGAATCAACATGCTTTTTGTGTTGGGTGGAAATGGTACTCATGCTGGTGCCAATGCAATACACAATGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0199g00220.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA18G21720.1 (Glycine max), 3'ss of exon 7
gtgctcaatttattgtttcctattgttagacatttctttgtttgcttgaggaaattgctgatgtagaattacataatgatgccaggcatcaag-----tgttctgatatatgtattttcattttgctgttagAAAAGAGGAATCAACATGCTTTTTGTGTTGGGTGGAAATGGTACTCATGCTGGTGCCAATGCAATACACAATGAG
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gtggttgattgact-taatctattaacaaaccgatttatgatttcacagacaactt--taaggtttttttcgatacaggtgctaatttttgagactgatattctccaatatgaatatta---ttgattacagAAAAGAGGGATCAACATGCTTTTTGTATTGGGTGGAAATGGCACACATGCTGGTGCCAATGCAATTCACCATGAG
upper sequence: Vv00s0199g00220.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G38450.1 (Glycine max), 3'ss of exon 6
gtgctcaatttattgtttcctattgttagacatttctttgtttgcttgaggaaattgctgatgtagaattacataatgatgccaggcatcaag-----tgttctgatatatgtattttcattttgctgttagAAAAGAGGAATCAACATGCTTTTTGTGTTGGGTGGAAATGGTACTCATGCTGGTGCCAATGCAATACACAATGAG
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gtggttgattgacc-taatctattaacaaactgattgatgatttcacagacaagtttaaggttttttatgataca--ggtgctaatttttgagactgatattctccaatatgaatatta---ttgattacagAAAAGAGGGATCAACATGCTTTTTGTATTGGGTGGAAATGGCACACATGCTGGTGCCAATGCAATTCACCACGAG
upper sequence: Vv00s0199g00220.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA01G03040.1 (Glycine max), 3'ss of exon 6
gtgctcaatttattgtttcctattgttagacatttctttgtttgcttgaggaaattgctgatgtagaattacataatgatgccaggcatcaagtgttctgatatatgtattttcattttgctgttagAAAAGAGGAATCAACATGCTTTTTGTGTTGGGTGGAAATGGTACTCATGCTGGTGCCAATGCAATACACAATGAG
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gtggtctattgat-gcattctattgacaaa-attcatgattttgcagaaaaaagtttatttttttattctgggtact-atatttactgtcatttgtt-tgacgtgcaagttatggattt-----cagGAAAGAGGGATCAACATGCTCTTTGTGTTGGGTGGAAATGGCACACATGCTGGTGCAAATGCAATTCACAATGAG
upper sequence: Vv00s0199g00220.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G04570.1 (Glycine max), 3'ss of exon 7
gtgctcaatttattgtttcctattgttagacatttctttgtttgcttgaggaaattgctgatgtagaattacataatga-tgccaggcatcaagtgttctgatatatgtattttcattttgctgttagAAAAGAGGAATCAACATGCTTTTTGTGTTGGGTGGAAATGGTACTCATGCTGGTGCCAATGCAATACACAATGAG--------------------
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gtggtctatatatcccttctataaaataaatgttg---tatttgc--ggagaagtttttatttt----ttttatactgggtacaatatttactgtgatttgtttgacgtgcatgt-tatggatttcagGAAAGAGGGATCAACATGCTCTTTGTGTTGGGTGGAAATGACACACATGCTGGTGCAAATGCAATTCATAATGAGGTTATCAATCCTTTATCTCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71859409|gb|DT008464.1|DT008464EST: GAGTTTCACGTGGGGGACCCAGTGTTGCTCAAATTGTTGATAGTATGGAG AAAAGAGGAATCAACATGCTTTTTGTGTTGGGTGGAAATGGTACTCATGCT
genomic: GAGTTTCACGTGGGGGACCCAGTGTTGCTGAAATTGTTGATAGTATGGAGgtgctcaatt ... ttgctgttagAAAAGAGGAATCAACATGCTTTTTGTGTTGGGTGGAAATGGTACTCATGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ataatgatgccaggcatcaagtgttctgatatatgtattttcattttgctgttagAAAAGAGGAATCAACATGCTTTTTGTGTTGGGTGGAAATGGTACTCATGCTGGTGCCAATGCAATACACAATGAG
ttctgat putative branch site (score: 3)
ttttcatttt putative PPT
tgatatatgtattttc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgctcaatttattgtttcctattgttagacatttctttgtttgcttgaggaaattgctgatgtagaattacataatgatgccaggcatcaagtgttctgatatatgtattttcattttgctgttagAAAAGAGGAATCAACATGCTTTTTGTGTTGGGTGGAAATGGTACTCATGCTGGTGCCAATGCAATACACAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG