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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtattggtttataaactctaagatgatgctttggccaactgtgtgataactatttgatttatctctcttttctcctccttttcaaagtactctttagactttatacgtttttttaagaaaaaaagattaaaccctctttcaattcatgagaggctgatatgatgttttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAG

Basic information

species Vitis vinifera
transcript Vv00s0187g00170.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30136299|gb|CB921637.1|CB921637
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|294966792|gb|GW837811.1|GW837811
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGGGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|32250235|gb|CD716054.1|CD716054
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|30135330|gb|CB920668.1|CB920668
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAA-TG                         CCACAGATGATACCCAGCGTATGAT
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGAT
EST: gi|110407602|gb|EC973208.1|EC973208
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|110428045|gb|EC994506.1|EC994506
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|32456961|gb|CD798135.1|CD798135
EST:     ATTAAGGGGTTTATTTAGTCTCATTCTGGGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: ATTAAGGGGTTTATTTAGTCTCATTCT--GGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|110417816|gb|EC983901.1|EC983901
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|110712100|gb|EE089333.1|EE089333
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|32457083|gb|CD798257.1|CD798257
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATCATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|110428615|gb|EC995092.1|EC995092
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|352764273|gb|FQ471253.1|FQ471253
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|110429192|gb|EC995681.1|EC995681
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|27580483|gb|CB003178.1|CB003178
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|110728851|gb|EE104791.1|EE104791
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAACGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|30125541|gb|CB910880.1|CB910880
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaagattaaaccctctttcaattcatgagaggctgatatgatgttttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAG
                                            ttttgat  putative branch site (score: 4)
                tttcaatt  TA-rich tract