Sequence
atgc intronic sequence ATGC exonic sequence...atgggaatttctattggccgtttgcattttagatatagattctctcttcattttccatttattttctattatgtattaatatgcactcatcatgatacagGCGTATTTCCCAGCAATTTCTCAGCCTGAAGGATTACCTCTTAAAGTCCAGGATGCAAAAGGTCATGAATGGATATTTCAGTTTCGATTTTGGCCCAATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0181g00260.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA13G31970.1 (Glycine max), 3'ss of exon 6
atgggaatttctattggccgtttgcattt-tagatatagattctctcttcattttc-----catttatttt-ctattatgtattaatatgcact-catcatgatacagGCGTATTTCCCAGCAATTTCTCAGCCTGAAGGATTACCTCTTAAAGTCCAGGATGCAAAAGGTCATGAATGGATATTTCAGTTTCGATTTTGGCCCAATA
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--------ccttatttgtaacgtaaattaattaatatacattctcttattattttcatgaatattcaatcaattgttatataatattattttctgctccatgagacagACCTACTTCCCACCAATTTCTCAGCCTGAAGGATTGCCTCTTAAAATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAATTTCGCTTCTGGCCAAACA
upper sequence: Vv00s0181g00260.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA15G07350.1 (Glycine max), 3'ss of exon 7
atgggaatttctattggccgtttgcattttagatatagattctctcttcattttccatttattttctattatgtattaatatgcactcatcatgatacagGCGTATTTCCCAGCAATTTCTCAGCCTGAAGGATTACCTCTTAAAGTCCAGGATGCAAAAGGTCATGAATGGATATTTCAGTTTCGATTTTGGCCCAATA
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agcatagtagtaatttgtttattatttgtcatggtcatcttgttttttcatgaatattcaatcaatggttatatgatattatttctgctccatgagacagACCTACTTCCCACCAATTTCTCAGCCTGAAGGATTGCCACTTAAAATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAATTTCGCTTCTGGCCAAACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttcattttccatttattttctattatgtattaatatgcactcatcatgatacagGCGTATTTCCCAGCAATTTCTCAGCCTGAAGGATTACCTCTTAAAGTCCAGGATGCAAAAGGTCATGAATGGATATTTCAGTTTCGATTTTGGCCCAATA
tattaat putative branch site (score: 2)
ttttccatttattttc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgggaatttctattggccgtttgcattttagatatagattctctcttcattttccatttattttctattatgtattaatatgcactcatcatgatacagGCGTATTTCCCAGCAATTTCTCAGCCTGAAGGATTACCTCTTAAAGTCCAGGATGCAAAAGGTCATGAATGGATATTTCAGTTTCGATTTTGGCCCAATA
- - - - - ctattgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactcat