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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataaatcaattttctcctatgagttaacttctttctagggatttccccccaccttcccaccacaagtacagatattttttatatgcatttgcttattaagaaaattttgatgcagGTACAAAGAAGGCCATGCTATAAGACATTGGAAGGAAACCCAGCATTGCTATTCTCTTGAATTGGAAACCCAACGTGTGTGGGATTATGTTGGGGACAAC

Basic information

species Vitis vinifera
transcript Vv00s0125g00250.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0125g00250.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA15G00770.1 (Glycine max), 3'ss of exon 8
gtaataaatcaattttctcctatgagttaacttctttctagggatttccccccaccttcccaccacaagtacagatattttttatatgcatttgcttattaagaaaattttgatgcagGTACAAAGAAGGCCATGCTATAAGACATTGGAAGGAAACCCAGCATTGCTATTCTCTTGAATTGGAAACCCAACGTGTGTGGGATTATGTTGGGGACAAC
                    |  || | |||   | | | |  || |         || |   |     |  |      ||| || ||  |      ||   |||||| ||||| ||| ||||| | ||| |||||||||| ||| ||||| || || |||||||||||||| || ||| |||||||  |||| || ||||||||||| || ||||||
-------------------gtgagactgaacccttgttttgtcatgttttattctttttctttcttttatgta------tttgatttgattacaaccatatggaaaatcttgattcagATACAAGGGAGGGCATGCTATAATACACTGGAAAGAGACACAGCATTGCTATTCCCTAGAAGTGGAAACAAAACGAGTTTGGGATTATGTGGGAGACAAC

upper sequence: Vv00s0125g00250.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT2G26000.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaataaatcaattttctcctatgagttaacttctttctagggatttccccccaccttcccaccacaagtacagatattttttatatgcatttgcttattaagaaaattttgatgcagGTACAAAGAAGGCCATGCTATAAGACATTGGAAGGAAACCCAGCATTGCTATTCTCTTGAATTGGAAACCCAACGTGTGTGGGATTATGTTGGGGACAAC
|||   | |  |||| || |    | ||| | |     ||| ||  |  | ||  ||   |    | ||   |   |||| |        |||| | | ||        ||   | |||||||| ||||| ||||| | ||| || ||| |||| ||  ||||||||||||| |||||  | ||||| |||||||| |||||||||| ||| ||||| 
gtatgtactgcatttcctgc----aattagcat-----tagagacatgtctccttctcatctgtcccaggttaaccatttctc-------tttgttaaata-------cttatggtagGTACAAGGAAGGACATGCCAGAAGGCACTGGGAGGAGACAGAGCATTGCTATTCACTTGAGCTTGAAACACAACGTGTTTGGGATTATGCTGGTGACAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacaagtacagatattttttatatgcatttgcttattaagaaaattttgatgcagGTACAAAGAAGGCCATGCTATAAGACATTGGAAGGAAACCCAGCATTGCTATTCTCTTGAATTGGAAACCCAACGTGTGTGGGATTATGTTGGGGACAAC
                                            ttttgat  putative branch site (score: 4)
           atattttttatatgca  TA-rich tract