1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aaggaacatttatgcattgtatgtatgttttgaaaatgtttctttgtgtttataggcttatagcatttgtgtaccttctaatatgtatgatctctttcagTGCCTAGAGGAATGGAGACCTCAAGATTGCTCAGAAAGCAGATTATGGAAGAGCAAGAGTTTGCACAGGATCTTGAATTTGAGACAAGGCGTCTCTCCAA
species | Vitis vinifera |
transcript | Vv19s0090g01780.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAGCTTCACATGA TGCCTAGAGGAATGGAGACCTCAAGATTGCTCAGAAAGCAGATTATGGAAGEST: gi|161720772|gb|FC070280.1|FC070280
genomic: GAGCTTCACATGAgtaagtacat ... tctctttcagTGCCTAGAGGAATGGAGACCTCAAGATTGCTCAGAAAGCAGATTATGGAAG
EST: AATGTATTATCCTTTGCAATATGCAGACATGGATTCCGAGCTTCACATGA TGCCTAGAGGAATGGAGACCTCAAGATTGCTCAGAAAGCAGATTATGGAAG
genomic: AATGTATTATCCTTTGCAATATGCAGACATGGATTCCGAGCTTCACATGAgtaagtacat ... tctctttcagTGCCTAGAGGAATGGAGACCTCAAGATTGCTCAGAAAGCAGATTATGGAAG
gtgtttataggcttatagcatttgtgtaccttctaatatgtatgatctctttcagTGCCTAGAGGAATGGAGACCTCAAGATTGCTCAGAAAGCAGATTATGGAAGAGCAAGAGTTTGCACAGGATCTTGAATTTGAGACAAGGCGTCTCTCCAA
ttctaat putative branch site (score: 2)
tctctttc putative PPT
taatatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaggaacatttatgcattgtatgtatgttttgaaaatgtttctttgtgtttataggcttatagcatttgtgtaccttctaatatgtatgatctctttcagTGCCTAGAGGAATGGAGACCTCAAGATTGCTCAGAAAGCAGATTATGGAAGAGCAAGAGTTTGCACAGGATCTTGAATTTGAGACAAGGCGTCTCTCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
-aggaaca
- - - - - - tgcattg
- - - - - - - - -tgtatgt
- - - - - - - - - - - - - - - -gaaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatttg