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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcttgtttcttcttaattttattttccatctatttcctcctctgaaagttctgacttgtttattaaaaatatttagAAGAAAAAGCGTGCACACAAAACAAGTGATCCTGATATAAATG

Basic information

species Vitis vinifera
transcript Vv19s0090g01130.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161706682|gb|FC056343.1|FC056343
EST:     TGGGAAACTTAAATCCCCCTCAAATGGAAGGCTTGGCTGCGTTACTAGCT                         AAGAAAAAGCGTGCACACAAAACAAGTGATCCTGATATAAATGGTA
genomic: TGGGAAACTTAAATCCCCCTCAAATGGAAGGCTTGGCTGCGTTACTAGCTgtaagtcttg ... aaatatttagAAGAAAAAGCGTGCACACAAAACAAGTGATCCTGATATAAATGGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttccatctatttcctcctctgaaagttctgacttgtttattaaaaatatttagAAGAAAAAGCGTGCACACAAAACAAGTGATCCTGATATAAATG
                           ttctgac  putative branch site (score: 2)
                           ttctgacttgtttatt  TA-rich tract