Sequence
atgc intronic sequence ATGC exonic sequencegtaccttcttgattgctttatatttctttcttcctttctgtaatactatccacaagttattttcttttgtgttctattttcctcattacagGTCCTTCCTCATATAAAAGAAGCTGGATACAATGCAATCCAGTTGATTGGAGTTGTTGAGCACAAAGACTATTCCTCTGTAGGTTATAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g00920.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os06g26234.1 (Oryza sativa), 3'ss of exon 5
gtaccttcttgattgctttatattt-ctttcttcctttctgtaatactatccacaagttattttcttttgtgttctattttcctcattacagGTCCTTCCTCATATAAAAGAAGCTGGATACAATGCAATCCAGTTGATTGGAGTTGTTGAGCACAAAGACTATTCCTCTGTAGGTTATAAA
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---------gtatttcctaacacctgcctttcggtgttttgtggt--tactcttaacttcatta---tcaacttttgtttcttccatta--gGTCCTCCCTCATATAAAAGATGCTGGCTATAATGCTATTCAATTGATTGGAATTGTGGAACACAAGGATTACTCTTCTGTTGGCTATAAG
upper sequence: Vv19s0090g00920.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G10380.1 (Glycine max), 3'ss of exon 5
--------------------------------gtaccttcttgattgctt-tatatttctttcttcctttctgtaatactatccacaagttattttcttttgtgttctattttcctcattacagGTCCTTCCTCATATAAAAGAAGCTGGATACAATGCAATCCAGTTGATTGGAGTTGTTGAGCACAAAGACTATTCCTCTGTAGGTTATAAA
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gtttcccccctcatttctttgggttggaatttgtaactaatcaattatacatatcttccatgtctatatattgtaatgggctccattgaatttttacttttattatatg-----cacaatgcagGTGCTTCCTTACATTAAGGAAGCTGGATACAATGCCATCCAGTTGATTGGAATTGTTGAACACAAGGATTATTTTACTGTTGGTTACAGA
upper sequence: Vv19s0090g00920.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT3G20440.2 (Arabidopsis thaliana), 3'ss of exon 5
gtaccttcttgattgctttatatttctttcttcctttctgtaatactatccacaagt-tattttcttttgtgttctattttcctcattacagGTCCTTCCTCATATAAAAGAAGCTGGATACAATGCAATCCAGTTGATTGGAGTTGTTGAGCACAAAGACTATTCCTCTGTAGGTTATAAA
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gtacctcct--aatgtatt-cattgtattcttacttgcaatcttattatgcacacatctcagtttttctgtggcctat----caaacatcagGTCCTTCCTCATGTGAAAAGAGCTGGATACAATGCAATCCAGTTGATTGGTGTCCCTGAGCACAAGGATTATTTTACTGTTGGTTATAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctgtaatactatccacaagttattttcttttgtgttctattttcctcattacagGTCCTTCCTCATATAAAAGAAGCTGGATACAATGCAATCCAGTTGATTGGAGTTGTTGAGCACAAAGACTATTCCTCTGTAGGTTATAAA
ttattttcttttgtgt CT-rich tract
aagttattttctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaccttcttgattgctttatatttctttcttcctttctgtaatactatccacaagttattttcttttgtgttctattttcctcattacagGTCCTTCCTCATATAAAAGAAGCTGGATACAATGCAATCCAGTTGATTGGAGTTGTTGAGCACAAAGACTATTCCTCTGTAGGTTATAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG