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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcatttttgctcatacacaaactgaaattccttaatgttatgtctttcatggctaaacaaatgttttagtaaagaagtcttcgtcatctagattcaatatttttagaacctattttgattacagGTTCCCATGACAAGGCTTCGGAAACGGGTTGCAATGCATTTGAAAGATTCTCAAAACACTTTTGCTATGTTGAAAACATTCAATGAATTTGATAT

Basic information

species Vitis vinifera
transcript Vv19s0090g00750.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0090g00750.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G55070.1 (Arabidopsis thaliana), 3'ss of exon 10
gtcatttttgctcatacacaaactgaaattccttaatgttatgtctttcatggctaaacaaatgttttagtaaagaagtcttcgtcatctagattcaatatttttagaacctattttgattacagGTTCCCATGACAAGGCTTCGGAAACGGGTTGCAATGCATTTGAAAGATTCTCAAAACACTTTTGCTATGTTGAAAACATTCAATGAATTTGATAT
     | |      ||    |  |    ||   | || | |||       ||  |   |   | |   || |||| | | | |||   | |||||  ||  | | |    |||   |   | |||||||| |||||||| ||||| |||||||| ||||     |||||||| ||||| |||||||||||  || ||| ||| ||||||||| |||||||
----gtatgaaaactatgtcatttattctttacttatataatgctccgtgtgttttctc---tatgaaagaaaagcattttacgttcacaagatttgatgatatca---tctaacatcgatgcagGTTCCTATGACAAGACTTCGCAAACGGGTGGCAACTAGGTTGAAAGACTCTCAGAACACTTTTGCGTTGCTGACAACTTTCAATGAAGTTGATAT

upper sequence: Vv19s0090g00750.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT4G26910.3 (Arabidopsis thaliana), 3'ss of exon 5
-------------gtcatttttgctcatacacaaactgaaattccttaatgttatgtctttcat--ggctaaacaaatgttttagtaaa--gaagtcttcgtcatc-tagattcaatatttttagaacctattttgattacagGTTCCCATGACAAGGCTTCGGAAACGGGTTGCAATGCATTTGAAAGATTCTCAAAACACTTTTGCTATGTTGAAAACATTCAATGAATTTGATAT
              |||||||| ||      |      |||||  | ||||     ||     |      ||   | | | |||   ||   ||  |||     ||  | | ||| |  | | | |  |||     | | |||||||| |||||||| ||||||||||| |||||||     |||||||| |||||||| ||||| ||  || ||| ||| ||||||||| |||||||
gtatgcaaaatctatcatttttcctggcttccgtctgaaaatttttaaatgactgatcagaggttaaataaagttagtttgttacctaataaaaagctttacagtcacataatcagtgatatgaca-tctaacaacactgcagGTTCCGATGACAAGACTTCGGAAACGAGTTGCAACAAGATTGAAAGACTCTCAAAATACTTTCGCGTTGCTGACAACTTTCAATGAAGTTGATAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaagaagtcttcgtcatctagattcaatatttttagaacctattttgattacagGTTCCCATGACAAGGCTTCGGAAACGGGTTGCAATGCATTTGAAAGATTCTCAAAACACTTTTGCTATGTTGAAAACATTCAATGAATTTGATAT
                                           ttttgat  putative branch site (score: 4)
                                       cctatttt  CT-rich tract
                          aatatttttagaacct  TA-rich tract