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...tacatctgtactgtcttattatattgtttgcaagttatgatgattacagcggaatataatcttcacatttattgtttctgattctctattctgtataaagTGCTACATCAGGGGGCATTCTTGATAGAGCTATTGAAGCAGAGGACAGAAGGCATGGTGACTTTTTAAGGCTG
species | Vitis vinifera |
transcript | Vv19s0090g00560.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTGTAATAGGTCACAG TGCTACATCAGGGGGCATTCTTGATAGAACCATTGAAGCAAAGGACAAAAGEST: gi|110688432|gb|EE066976.1|EE066976
genomic: AAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTGTAATAGGTCACAGgtgggtagtt ... ctgtataaagTGCTACATCAGGGGGCATTCTTGATAGAGCTATTGAAGCAGAGGACAGAAG
EST: AAGCTTGANGAAGAGAAAGGCATCATAGTTCGCTTTGTAATANGTCACAG TGCTACATCAGGGGGCATEST: gi|71875910|gb|DT024965.1|DT024965
genomic: AAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTGTAATAGGTCACAGgtgggtagtt ... ctgtataaagTGCTACATCAGGGGGCAT
EST: AAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTGTAATAGGTCACAG TGCTACATCAGGGGGCATTCTTGATAGAGCTATTGAAGCAGAGGACAGAAGEST: gi|77583730|gb|DV220900.1|DV220900
genomic: AAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTGTAATAGGTCACAGgtgggtagtt ... ctgtataaagTGCTACATCAGGGGGCATTCTTGATAGAGCTATTGAAGCAGAGGACAGAAG
EST: AAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTGTAATAGGTCACAG TGCTACATCAGGGGGCATTCTTGATAGAGCTATTGAAGCAGAGGACAGAAGEST: gi|71875911|gb|DT024966.1|DT024966
genomic: AAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTGTAATAGGTCACAGgtgggtagtt ... ctgtataaagTGCTACATCAGGGGGCATTCTTGATAGAGCTATTGAAGCAGAGGACAGAAG
EST: AAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTGTAATAGGTCACAG TGCTACATCAGGGGGCATTCTTGATAGAGCTATTGAAGCAGAGGACAGAAGEST: gi|110712361|gb|EE089898.1|EE089898
genomic: AAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTGTAATAGGTCACAGgtgggtagtt ... ctgtataaagTGCTACATCAGGGGGCATTCTTGATAGAGCTATTGAAGCAGAGGACAGAAG
EST: AAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTGTAATAGGTCACAG TGCTACATCAGGGGGCATTCTTGATAGAGCTATTGAAGCAGAGGACAGAAG
genomic: AAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTGTAATAGGTCACAGgtgggtagtt ... ctgtataaagTGCTACATCAGGGGGCATTCTTGATAGAGCTATTGAAGCAGAGGACAGAAG
acagcggaatataatcttcacatttattgtttctgattctctattctgtataaagTGCTACATCAGGGGGCATTCTTGATAGAGCTATTGAAGCAGAGGACAGAAGGCATGGTGACTTTTTAAGGCTG
ttctgat putative branch site (score: 3)
ttctctattct CT-rich tract
aatataatcttcacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacatctgtactgtcttattatattgtttgcaagttatgatgattacagcggaatataatcttcacatttattgtttctgattctctattctgtataaagTGCTACATCAGGGGGCATTCTTGATAGAGCTATTGAAGCAGAGGACAGAAGGCATGGTGACTTTTTAAGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - tactgtc
- - - - - - - - - - - - tgtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcaca