1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
gtatgccattctcaactttgctttaagaaacttaaggagtagtaattgtatcacaaatttttcttcactatttgtcattaattctctgcaacatgtgacactggaaagtcaatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTATATATGGTGATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTG
species | Vitis vinifera |
transcript | Vv19s0085g00880.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|349827094|gb|FQ421367.1|FQ421367
genomic: ATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|351031176|gb|FQ445003.1|FQ445003
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|351022976|gb|FQ428885.1|FQ428885
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|110720877|gb|EE097183.1|EE097183
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|351042224|gb|FQ442691.1|FQ442691
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: ATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|351028680|gb|FQ446353.1|FQ446353
genomic: ATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: ATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|351026695|gb|FQ436348.1|FQ436348
genomic: ATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|71860234|gb|DT009289.1|DT009289
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAA GTTAACTATGGGGCTGCCTTTATTEST: gi|351012435|gb|FQ427036.1|FQ427036
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|351023404|gb|FQ432787.1|FQ432787
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|351022813|gb|FQ428722.1|FQ428722
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: ATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|349827719|gb|FQ422587.1|FQ422587
genomic: ATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: ATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|351012851|gb|FQ430414.1|FQ430414
genomic: ATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|351024564|gb|FQ426373.1|FQ426373
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|77587321|gb|DV222801.1|DV222801
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|349823645|gb|FQ415055.1|FQ415055
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|351014822|gb|FQ438022.1|FQ438022
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|349829516|gb|FQ420048.1|FQ420048
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|351019842|gb|FQ439659.1|FQ439659
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAAAGGAGGCAAAACGTEST: gi|30300500|gb|CB977294.1|CB977294
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|351014217|gb|FQ434806.1|FQ434806
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|33405914|gb|CF211541.1|CF211541
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGTAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|351021635|gb|FQ430522.1|FQ430522
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|33407740|gb|CF213367.1|CF213367
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|71864068|gb|DT013123.1|DT013123
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|110711777|gb|EE088642.1|EE088642
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|110711744|gb|EE088569.1|EE088569
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|161718701|gb|FC066339.1|FC066339
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|349832930|gb|FQ423052.1|FQ423052
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|71861762|gb|DT010817.1|DT010817
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|294966112|gb|GW837479.1|GW837479
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|110717484|gb|EE093391.1|EE093391
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|351033615|gb|FQ447774.1|FQ447774
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|71856998|gb|DT006053.1|DT006053
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|110377270|gb|EC942333.1|EC942333
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|110685428|gb|EE062138.1|EE062138
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|351027861|gb|FQ448431.1|FQ448431
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|351014497|gb|FQ437499.1|FQ437499
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|349824141|gb|FQ417528.1|FQ417528
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|351022046|gb|FQ437833.1|FQ437833
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTATAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|71860225|gb|DT009280.1|DT009280
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACEST: gi|110703160|gb|EE079765.1|EE079765
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAAC
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|110711357|gb|EE087747.1|EE087747
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|110711773|gb|EE088638.1|EE088638
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|349832839|gb|FQ422961.1|FQ422961
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCATGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTCGAGTTCTCTGCATAGGAGGCAAAACGEST: gi|351015664|gb|FQ427149.1|FQ427149
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATT-GAGTTCTCTGCAGAGGAGGCAAAACG
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|349827446|gb|FQ422314.1|FQ422314
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|110700048|gb|EE077644.1|EE077644
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|161710254|gb|FC060645.1|FC060645
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|110713914|gb|EE090252.1|EE090252
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAACCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|351012714|gb|FQ430277.1|FQ430277
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|349828464|gb|FQ417206.1|FQ417206
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGACTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|110719472|gb|EE094631.1|EE094631
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|351024107|gb|FQ423530.1|FQ423530
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|351021887|gb|FQ437674.1|FQ437674
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACCGEST: gi|351028364|gb|FQ427260.1|FQ427260
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAAC-G
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|351016508|gb|FQ423935.1|FQ423935
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|110712898|gb|EE088347.1|EE088347
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|349832403|gb|FQ420964.1|FQ420964
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|349831123|gb|FQ420793.1|FQ420793
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|110719810|gb|EE095263.1|EE095263
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|161712950|gb|FC062076.1|FC062076
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|351033667|gb|FQ462197.1|FQ462197
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: ATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTEST: gi|352763959|gb|FQ465409.1|FQ465409
genomic: ATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
tcactatttgtcattaattctctgcaacatgtgacactggaaagtcaatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTATATATGGTGATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTG
cattaat putative branch site (score: 3)
atttgtcattaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgccattctcaactttgctttaagaaacttaaggagtagtaattgtatcacaaatttttcttcactatttgtcattaattctctgcaacatgtgacactggaaagtcaatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTATATATGGTGATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT