1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aatatttcaatgctacgatgctgctacaagcctatttcaccaggaagctcaattaccttgctttgtaagtgtattgaggattattcttctccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAATCGGAGGTGGTGATTCTGTTGCTGCTGTAGAGAAGGTTGGGCTCGCTG
species | Vitis vinifera |
transcript | Vv19s0085g00370.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAG GCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAEST: gi|349824307|gb|FQ417718.1|FQ417718
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
EST: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAG GCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAEST: gi|71883278|gb|DT032333.1|DT032333
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
EST: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAG GCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAEST: gi|30125952|gb|CB911291.1|CB911291
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
EST: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAG GCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAEST: gi|351053335|gb|FQ459203.1|FQ459203
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
EST: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAG GCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAEST: gi|71888929|gb|DT037984.1|DT037984
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
EST: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAG GCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAEST: gi|71881435|gb|DT030490.1|DT030490
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
EST: ATGGACCTATGGGTGTGTT-GAGTTCGATAAGTTTGCATTGGGAACAGAG GCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAEST: gi|71881347|gb|DT030402.1|DT030402
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
EST: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAG GCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAEST: gi|71883560|gb|DT032615.1|DT032615
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
EST: ATGGACCTATGGGTGTGTT-GAGTTCGATAAGTTTGCATTGGGAACAGAG GCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAEST: gi|71885690|gb|DT034745.1|DT034745
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
EST: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAG GCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAEST: gi|349828158|gb|FQ415486.1|FQ415486
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACA
EST: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAG GCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAEST: gi|77580822|gb|DV219326.1|DV219326
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
EST: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAG GCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAEST: gi|30303547|gb|CB980341.1|CB980341
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
EST: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAG GCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAEST: gi|71887650|gb|DT036705.1|DT036705
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
EST: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAG GCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAEST: gi|71877456|gb|DT026511.1|DT026511
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
EST: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAG GCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAEST: gi|110700457|gb|EE078517.1|EE078517
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
EST: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAG GCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAEST: gi|71890004|gb|DT039059.1|DT039059
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
EST: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAG GCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAEST: gi|71884116|gb|DT033171.1|DT033171
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
EST: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAG GCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAEST: gi|28962808|gb|CB341841.1|CB341841
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
EST: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAG GCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAEST: gi|351012744|gb|FQ430307.1|FQ430307
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
EST: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAG GCAATAGCCAAGAAGTTGGCAGACCTAAATGAGAAGGGGGTGACAACTATAEST: gi|110731726|gb|EE106391.1|EE106391
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
EST: ATGGACCTATGGGTGTGTTTGAGTTCGATAAATTTGCATTGGGGACAGAG GCAATAGCCAAGAAGTGGGCAAACCTAATTGAGAGGGGGGTGACA-CTATAEST: gi|30254164|gb|CB971179.1|CB971179
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
EST: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAG GCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAEST: gi|71888994|gb|DT038049.1|DT038049
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
EST: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAG GCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAEST: gi|71876777|gb|DT025832.1|DT025832
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
EST: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAG GCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAEST: gi|22012404|gb|BQ797438.1|BQ797438
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
EST: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAG GCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAEST: gi|71867965|gb|DT017020.1|DT017020
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
EST: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAG GCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAEST: gi|351027624|gb|FQ446788.1|FQ446788
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
EST: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAG GCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
genomic: ATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGgtaatgcata ... ccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATA
agctcaattaccttgctttgtaagtgtattgaggattattcttctccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAATCGGAGGTGGTGATTCTGTTGCTGCTGTAGAGAAGGTTGGGCTCGCTG
ttattcttctcc CT-rich tract
attattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatatttcaatgctacgatgctgctacaagcctatttcaccaggaagctcaattaccttgctttgtaagtgtattgaggattattcttctccaactgcagGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAATCGGAGGTGGTGATTCTGTTGCTGCTGTAGAGAAGGTTGGGCTCGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - -caatgct
- - - - - - - - gatgctg
- - - - - - - - - - - - -acaagcc
- - - - - - - - - - - - - - - - - -ttcacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - accttgc