Sequence
atgc intronic sequence ATGC exonic sequence...gttacttctgtcatttttcataaccttgtagttattaaatcaggtcctgaaaattaattacactgagactgaggcattcaccccttttattggaatgcagTATCTAGATCGACCTGGAGTTAGTTTCTGTTCCAGGATAACTTATGACGATAATGCAATCACCAATGCTATTGAGATTTATGCCAGTTCCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0015g01750.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA04G12500.1 (Glycine max), 3'ss of exon 6
gttac-ttctgtcatttttcataaccttgtagttattaaatcaggtcctgaaa--attaatt-acactgagactgaggcattcaccccttttattggaatgcagTATCTAGATCGACCTGGAGTTAGTTTCTGTTCCAGGATAACTTATGACGATAATGCAATCACCAATGCTATTGAGATTTATGCCAGTTCCAG
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gccagatgctgctaacttgtc---cctcataggaattgttcttggtattagaactatcaacagatatcaagattttatcacct-tctttgttactggaatgcagCACCTAGATCGACCTGGTGTTAGCTTTTGCACGAGAACAACTTATGATGATAATGCTATCACCAATGCCATTGAGATTTATGATTGTCCTAG
upper sequence: Vv19s0015g01750.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT1G55680.1 (Arabidopsis thaliana), 3'ss of exon 6
gttacttctgtcatttttcataaccttgtagttattaaatcaggtcctgaaaattaattacactgagactgaggca-ttcacccctttt---attgg-----aatgcagTATCTAGATCGACCTGGAGTTAGTTTCTGTTCCAGGATAACTTATGACGATAATGCAATCACCAATGCTATTGAGATTTATGCCAGTTCCAG
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gtaagctctagagtttt--acaatcatggattt-ttagtttttcacacaacaattacatgcattctaatcaaggaacttcatctttttccacattgattttattttcagCATCTTGATAGACCTGGTGTGAGCTTTTGTTCACGTACTACTTATGATGATAATGCTATAACCAATGCTATTGAGATTTATAACAAACCCAG
upper sequence: Vv19s0015g01750.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT3G13340.1 (Arabidopsis thaliana), 3'ss of exon 6
gttacttctgtcatttttcataaccttgtagttattaaatcaggtcctgaaaattaattacactgagactgaggcattcaccccttttattggaatgcagTATCTAGATCGACCTGGAGTTAGTTTCTGTTCCAGGATAACTTATGACGATAATGCAATCACCAATGCTATTGAGATTTATGCCAGTTCCAG
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-gtaactctagatttatctatcacggattaatcacattatcga--cttgcaattctgttcta-tgagattcatctgttt-ccactttggtt------cagCATCTTGATAGACCGGGTGTCAGCTTTTGCTCTCGTATGACTTATGATGATAATGCTATAACCAATGCTATTGAGATCTACAACAAACCCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cctgaaaattaattacactgagactgaggcattcaccccttttattggaatgcagTATCTAGATCGACCTGGAGTTAGTTTCTGTTCCAGGATAACTTATGACGATAATGCAATCACCAATGCTATTGAGATTTATGCCAGTTCCAG
aattaat putative branch site (score: 3)
ttcaccccttttatt putative PPT
aaattaattacact TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttacttctgtcatttttcataaccttgtagttattaaatcaggtcctgaaaattaattacactgagactgaggcattcaccccttttattggaatgcagTATCTAGATCGACCTGGAGTTAGTTTCTGTTCCAGGATAACTTATGACGATAATGCAATCACCAATGCTATTGAGATTTATGCCAGTTCCAG
- - - -ctgtcat
- - - - - - - - - cataacc
- - - - - - - - - - - - - - - - - - - - caggtcc
- - - - - - - - - - - - - - - - - - - - - - - - - aaattaa