Sequence
atgc intronic sequence ATGC exonic sequence...agggtggtcctgaatcctgtgagattatatttcaggtacttgatttctgttcccgggttacatgcattgagaaccctcattgctatgaaatatttggcagGTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os11g16370.1 (Oryza sativa), 3'ss of exon 5
agggtggtcc--tgaatcctgtgagattatatttcaggtacttgatttctgttc-ccgggttacatgcattgagaaccctcattgctatgaaatatttggcagGTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAG
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aagaaaattagatcactgcttatagtttgttcttcactttatttattcatatttgttttactttatgtttcagagaccctaat-attttga--ctgctgtcagGTCAATCCTTCAGATGTAATTATTTTGGAAGGTATTCTGGTTTTCCATGATTCACGTGTCCGGGACTTGATGAACATGAAGATATTTGTTGATACAG
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os02g17320.1 (Oryza sativa), 3'ss of exon 5
--agggtggtcc--tgaatcctgtgagattatatttcaggtacttgatttctgttcccgggttacatgcatt-gagaaccctcattgctatgaaatatttggcagGTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAG
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gaaaattggatcactgattacagtttattcttctctttgtttatccatatctgtttt---actttatgtttcagagaaaccctaatattttga--cttctgtcagGTCAATCCTTCAGATGTAATTATTTTGGAAGGAATTCTGGTTTTCCATGATTCACGTGTCCGGGATTTGATGAACATGAAGATCTTTGTTGACACAG
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G034143_T01 (Zea mays), 3'ss of exon 5
--agggtggtcctgaatcctgtgagattatatttcaggtacttgatttctgttcccgggttacatgcattgagaaccctcattgctatgaaatatttggcagGTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAG
| | | | | || | | ||| | || || | | | | || || | || | | | | | ||| | | ||||| || ||||||||||| || ||||||||||| || || ||||||||||| || || |||| ||||||||||||||||| || ||||||||||
taacagaaaacatttgctttctgctggtttgtttacgttatttattcatcaatgcaatacttgatttat--acaagcaaccctaatttaaaactgtcgccagGTTAATCCTTCAGATGTTATTATTTTGGAAGGAATTCTAGTTTTTCATGATTCACGCCTCAGGGATTTGATGAACATGAAGATCTTCGTTGATACAG
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G034143_T03 (Zea mays), 3'ss of exon 6
--------------------------------------------------------------------------agggtggtcctgaatcctgtgagattatatttcaggtacttgatttctgttcccgggttacatgcattgagaaccctcattgctatgaaatatttggcagGTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAG
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gtaagtacctgatacactatttgctatttgtacaaccgcttatttcttcacatcgatttcgtattgtacatttaacagaaaacatttgctttctgctggtttgtttacgttatttattcatcaatgcaatacttgatttat--acaagcaaccctaatttaaaactgtcgccagGTTAATCCTTCAGATGTTATTATTTTGGAAGGAATTCTAGTTTTTCATGATTCACGCCTCAGGGATTTGATGAACATGAAGATCTTCGTTGATACAG
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G169462_T01 (Zea mays), 3'ss of exon 4
agggtggtcctgaatcctgtgagattatatttcaggtacttgatttctgttcccgggttac--atgcattgagaaccctcattgctatgaaatatttggcagGTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAG
| || || | || |||| | | || ||| |||| | | || || | || | | | | || ||| ||||| || ||||| ||||| || ||||||||||| || || ||||||||||| || || |||| ||||||||||||||||| || ||||||||||
--tttcttcaaaaagaaaaaaatgtttgctttctgatgatttgtttatgttatttattcatctattattttacaagcaaccctaattcttaactgttgccagGTTAATCCTTCGGATGTTATTATTTTGGAAGGAATTCTAGTTTTTCATGATTCACGCCTCAGGGATTTGATGAACATGAAGATTTTCGTTGATACAG
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G45270.1 (Glycine max), 3'ss of exon 5
agggtggtcctgaatcc-tgtgagattatatttcaggtacttgatttctg---ttcccgggttacatgcattgagaaccctcattgctatgaaatat----ttggcagGTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAG
||| | | | | || ||| | || | | | |||| | || | ||| |||| | | ||| || ||| || ||||| |||||||||||||| ||||||||||||||||| || |||| ||||| | ||||| ||||| |||||||| ||||||||||||||||| ||||
--------ataaaatacattttacatgatagtccaaatgcataatttttagttttacaaagttgttgtcattctcatttcattttgtgttgccttatcgtgttttcagGTGAACCCTTCAGATGTTATAATTTTGGAAGGCATCCTTGTTTTCCATGACCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGACACAG
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G08180.1 (Glycine max), 3'ss of exon 5
-agggtggt-cctgaatcctgtgagattatatttcaggtacttgatttctgttcccgg-gttacatgcattgagaaccctcattgctatgaaatatttggcagGTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAG-
|| | | | || | | |||||| || | | | ||| || | || | |||| | ||||| | || ||| ||||| |||||||||||||| |||||||| |||||||| || |||| ||||||| ||||| ||||| |||||||| ||||||||||||||||| ||||
aagcatagaatcatgatattccaaatgcatattttagct--tagttttatgaagttgctgtcattctcatttc-attttgtgttgctttatcatgtttt-caggTGAACCCTTCAGATGTTATAATTTTAGAAGGCATCCTTGTTTTCCATGATCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGACACAGG
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G47270.1 (Glycine max), 3'ss of exon 5
agggtggtcctgaatcctgtgagattatatttcag--gtacttgatttctgttcccgggttacatgcattgagaaccctcattgctatgaaatatttggcagGTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAG
|| | || | | | | ||| || | | || || | | | | | | | | ||| | | | | ||| |||||| ||||| | ||||| || ||||||||||| || || |||||||||||| || || || | ||||||||| ||||||||||||||||| ||||
--catgtttcttcttgcgttttatctccattagagtggaaatttatatggaatacaatttcagctatacttcccttttatgttggtttaatctgttttgcagGTAAACCCAGCGGATGTTATTATTTTGGAAGGTATCCTTGTTTTTCATGATCCACGAGTGCGAGCATTGATGAATATGAAGATATTTGTTGACACAG
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT1G55810.1 (Arabidopsis thaliana), 3'ss of exon 5
---agggtggtcctgaatcctgtgagattatatttcaggtacttgatttctgttcccgggttacatgcattgagaaccctcattgctatgaaatatttggcagGTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAG
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ttacatgcactcttgtttgtcagatacataaacttgtcat-catagcctatataagaatcatgcttatactaatatttctctgt-ttatgatatatttg-cagGTGAATCCTTCTGACGTTATAATTCTGGAAGGTATACTCATTTTCCATGACCCTCGGGTGCGAGATTTGATGAACATGAAGATATTTGTAGACGCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718287|gb|FC066969.1|FC066969EST: CAAAATATGACTTCAAGAGTTACAAAAACAATGTGTTTCCAGCGAGAAGG GTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGAT
genomic: CAAAATATGACTTCAAGAGTTACAAAAACAATGTGTTTCCAGCGAGAAGGgtaaaatctt ... tatttggcagGTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctgttcccgggttacatgcattgagaaccctcattgctatgaaatatttggcagGTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAG
tatgaaatattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agggtggtcctgaatcctgtgagattatatttcaggtacttgatttctgttcccgggttacatgcattgagaaccctcattgctatgaaatatttggcagGTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
-gggtggt
- - - - - tgaatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatgaa