1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gaaattttactcatggaaagccaacagttgtgatttgatctttcgcaaattttcaaacagtaaattgttataacaaatattcattttctaatgtttacagCTTGACCACCGTATCCTTGCGACTGCAACATTAATGTCAATTGGCATTTTGTGGTGGTCAACAAGAAAATTGGACATACATCCAGCAGTACGATTTTTAA
species | Vitis vinifera |
transcript | Vv19s0015g01340.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCATGGAGCCATTCATACGCAACTTCTTCGAGAATACATCAACAGTGCAG CTTGACCACCGTATCCTTGCGACTGCAACATTAATGTCAATTGGCATTTTGEST: gi|32245891|gb|CD711710.1|CD711710
genomic: GCATGGAGCCATTCATACGCAACTTCTTTGAGAATACATCAACAGTGCAGgtattgttcc ... atgtttacagCTTGACCACCGTATCCTTGCGACTGCAACATTAATGTCAATTGGCATTTTG
EST: GCATGGAGCCATTCATACGCAACTTCTTCGAGAATACATCAACAGTGCAG CTTGACCACCGTATCCTTGCGACTGCAACATTAATGTCAATTGGCATTTTGEST: gi|27582559|gb|CB005254.1|CB005254
genomic: GCATGGAGCCATTCATACGCAACTTCTTTGAGAATACATCAACAGTGCAGgtattgttcc ... atgtttacagCTTGACCACCGTATCCTTGCGACTGCAACATTAATGTCAATTGGCATTTTG
EST: GCATGGAGCCATTCATACGCAACTTCTTCGAGAATACATCAACAGTGCAG CTTGACCACCGTATCCTTGCGACTGCAACATTAATGTCAATTGGCATTTTG
genomic: GCATGGAGCCATTCATACGCAACTTCTTTGAGAATACATCAACAGTGCAGgtattgttcc ... atgtttacagCTTGACCACCGTATCCTTGCGACTGCAACATTAATGTCAATTGGCATTTTG
caaattttcaaacagtaaattgttataacaaatattcattttctaatgtttacagCTTGACCACCGTATCCTTGCGACTGCAACATTAATGTCAATTGGCATTTTGTGGTGGTCAACAAGAAAATTGGACATACATCCAGCAGTACGATTTTTAA
ttctaat putative branch site (score: 2)
taaattgttataacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaattttactcatggaaagccaacagttgtgatttgatctttcgcaaattttcaaacagtaaattgttataacaaatattcattttctaatgtttacagCTTGACCACCGTATCCTTGCGACTGCAACATTAATGTCAATTGGCATTTTGTGGTGGTCAACAAGAAAATTGGACATACATCCAGCAGTACGATTTTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - -ctcatgg
- - - - - - - - -aagccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - tcaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaata