Sequence
atgc intronic sequence ATGC exonic sequencegtagatatctgaagaatttttctttcatttttccagggctcttgttgcttctggtattgtatcctttatgctatagctgatttaagttgcatgcagGCAATTGCTGTTCTGAACTCTGGGTTGCTATTGATGGCAGTCATGGGCCTACTCTTTCCAGCTGTTCTACACTTCACACACACTGAAGTTCATTTTGGGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0015g01320.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G44910.1 (Glycine max), 3'ss of exon 6
gtagatatctgaagaatttttctttcatttttccagggctcttgttgcttctggtattgtatcctttatgctatagctgatttaagttgc-atgcagGCAATTGCTGTTCTGAACTCTGGGTTGCTATTGATGGCAGTCATGGGCCTACTCTTTCCAGCTGTTCTACACTTCACACACACTGAAGTTCATTTTGGGA
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gtagacatgttaa-----tttctgtcttttttattatgttcct-tagtttc--attttgtattac-----ctgtagctgattcaatttaccatgtagGCAGCTGCTTCCGTGAACTCAGGATTATTGCTAATGGCAGTCATGGGCATACTTTTTCCTGCTGTTCTACACTACACTCACACTGAGGTCCATGTTGGGA
upper sequence: Vv19s0015g01320.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G08030.1 (Glycine max), 3'ss of exon 6
gtagatatctgaagaatttttctttcatttttccagggctcttgttgcttctggtattgtatcctttatgctatagctgatttaagtt-gcatgcagGCAATTGCTGTTCTGAACTCTGGGTTGCTATTGATGGCAGTCATGGGCCTACTCTTTCCAGCTGTTCTACACTTCACACACACTGAAGTTCATTTTGGGA
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gtagacatgttaatttctatcttttttttttttttttttttttatgttccttagtttcattttgtattacctgtagctgattcaatttagcatgtagGCAGCTGCTTCCGTGAACTCAGGATTATTGCTGATGGCAGTCATGGGCATACTTTTTCCTGCTGTTCTACACTACACTCACACTGAGGTCCGTGTTGGGA
upper sequence: Vv19s0015g01320.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA05G21910.2 (Glycine max), 3'ss of exon 3
gtagatatctgaagaatttttctttcatttttccagggctcttgttgcttctggtattgtatcctttatgctatagctgatttaagttgc-atgcagGCAATTGCTGTTCTGAACTCTGGGTTGCTATTGATGGCAGTCATGGGCCTACTCTTTCCAGCTGTTCTACACTTCACACACACTGAAGTTCATTTTGGGA
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gtagacatgttaa-----tttctgccttttttattatgttcct-tagtttc--attttgtattac-----ctgtagctgattcaatttaccatgtagGCAGCTACTTCCGTGAACTCAAGATTATTGCTAATGGCAGTCATGGGCATACTTTTTCCTGCTGTTCTACACTACACTCACAGTGAGGTCCATGTTGGGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgttgcttctggtattgtatcctttatgctatagctgatttaagttgcatgcagGCAATTGCTGTTCTGAACTCTGGGTTGCTATTGATGGCAGTCATGGGCCTACTCTTTCCAGCTGTTCTACACTTCACACACACTGAAGTTCATTTTGGGA
agctgat putative branch site (score: 4)
atttaagtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagatatctgaagaatttttctttcatttttccagggctcttgttgcttctggtattgtatcctttatgctatagctgatttaagttgcatgcagGCAATTGCTGTTCTGAACTCTGGGTTGCTATTGATGGCAGTCATGGGCCTACTCTTTCCAGCTGTTCTACACTTCACACACACTGAAGTTCATTTTGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG