1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttaggtggagactgttacaggtatagatcttttcaggaaagggatatcatggtagtttgcatgcagctgaatctaggttaactaagttgctgtgttgtagGTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACCTGCGCCTGCATATGGTAGCAACTCTAGGGCTCGTTCTTTCAGTGATGGCTTTG
species | Vitis vinifera |
transcript | Vv19s0015g00920.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAGATGAAATGATATCCAAGGGAAATATGATTGATATGGCGGGTACTCAG GTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACCTGCGEST: gi|110377255|gb|EC942318.1|EC942318
genomic: TAGATGAAATGATATCCAAGGGAAATATGATTGATATGGCGGGTACTCAGgtgagcttat ... tgtgttgtagGTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACCTGCG
EST: TAGATGAAATGATATCCAAGGGAAATATGATTGATATGGCGGGTACTCAG GTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACCTGCGEST: gi|352781290|gb|FQ467371.1|FQ467371
genomic: TAGATGAAATGATATCCAAGGGAAATATGATTGATATGGCGGGTACTCAGgtgagcttat ... tgtgttgtagGTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACCTGCG
EST: TAGATGAAATGATATCCAAGGGAAATATGATTGATATGGCGGGTACTCAG GTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACCTGCGEST: gi|71870260|gb|DT019315.1|DT019315
genomic: TAGATGAAATGATATCCAAGGGAAATATGATTGATATGGCGGGTACTCAGgtgagcttat ... tgtgttgtagGTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACCTGCG
EST: GATTGATATGGCGGGTACTCAG GTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACCTGCG
genomic: GATTGATATGGCGGGTACTCAGgtgagcttat ... tgtgttgtagGTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACCTGCG
atcatggtagtttgcatgcagctgaatctaggttaactaagttgctgtgttgtagGTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACCTGCGCCTGCATATGGTAGCAACTCTAGGGCTCGTTCTTTCAGTGATGGCTTTG
ggttaac putative branch site (score: 3)
ttaactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaggtggagactgttacaggtatagatcttttcaggaaagggatatcatggtagtttgcatgcagctgaatctaggttaactaagttgctgtgttgtagGTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACCTGCGCCTGCATATGGTAGCAACTCTAGGGCTCGTTCTTTCAGTGATGGCTTTG
- -ggtggag
- - - - - -ctgttac
- - - - - - - - - - - - - - - - - aggaaag
- - - - - - - - - - - - - - - - - - - - - - - -catggta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgca