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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatcataccaacaaataggcttatttctcagtttcttactttgaattccaacttaagtgttttagtttggatttttgtctgtttagTTAGTTGGAACTTTGGTTGCTTCAAGTGCCTACTTTGGCACAGCATGGTGGCTTCTTACAAGCGTAGAAAATATCTGCCAACCAGACTTGCTACCAGAAG

Basic information

species Vitis vinifera
transcript Vv19s0015g00890.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g00890.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA14G01610.1 (Glycine max), 3'ss of exon 8
------------------------------------------------------gtaaatcataccaacaaataggcttatttctcagtttcttactttgaa-----ttccaacttaagtgttttagtttggatttttgtctgtttagTTAGTTGGAACTTTGGTTGCTTCAAGTGCCTACTTTGGCACAGCATGGTGGCTTCTTACAAGCGTAGAAAATATCTGCCA---ACCAGACTTGCTACCAGAAG
                                                       |   |  ||    |  | |     |  |  |  | | || |  | ||     |    |   || |   | | | | | |  ||   |||| |||| || || ||  | || |||||| |||  |||||||||||||||||||||||||| |||||  |   | | || ||  |   | ||  ||||| | | |   
gtaggtataggatatgataggatgtaaatgcatgcaaatatggtctaaaacaactttttttttaatcgctgagaaatcaaaatggcgatctttttccataaaaaaggtgatcagacaaataaataaatattgttaatttcgtgttcagTTGGTAGGTACCATAGTGGCTTCAGGTGTGTACTTTGGCACAGCATGGTGGCTTCTGACAAGTATTCCACACATATGTGATGAAACAAGCTTGCCAGCTG---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcttactttgaattccaacttaagtgttttagtttggatttttgtctgtttagTTAGTTGGAACTTTGGTTGCTTCAAGTGCCTACTTTGGCACAGCATGGTGGCTTCTTACAAGCGTAGAAAATATCTGCCAACCAGACTTGCTACCAGAAG
 ttcttac  putative branch site (score: 2)
                                        tttttgtct  putative PPT
                            ttttagttt  TA-rich tract