Sequence
atgc intronic sequence ATGC exonic sequencegtcacttttcctctccatctttttatcaaaccttttttctgcacttcaattgtgcaaggaaagtcactgtagtcattacatgttcaacagGAAAAAAGTCCAAATATCAAATGCTTTCTGATTGACCCTCCTGGTTCTGGCTTGTTCAATAAGATAACAAGGGGAGTAATGTACACTAGAGAGGAGGCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0015g00380.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA14G01780.2 (Glycine max), 3'ss of exon 4
gtcacttttcctctccatctttttatcaaaccttt--tttctgcacttcaattgtgcaaggaaagtcactg--tagtcattacatgttcaacagGAAAAAAGTCCAAATATCAAATGCTTTCTGATTGACCCTCCTGGTTCTGGCTTGTTCAATAAGATAACAAGGGGAGTAATGTACACTAGAGAGGAGGCTG
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---gtttaccacatccccccttcctccaggttgtagatgttctcattttgagtgtgaaagttatctgagttatttctggttctatgttcaacagGAAAAGAATCCAAACATCAAGTGCTTCCTCTTAGATCCTCCTGGCTCTGGTTTGTTTAATAAGGTAACCAGGGGAGTGATGTACACCAAAGAGGAGGCGG
upper sequence: Vv19s0015g00380.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G46950.1 (Glycine max), 3'ss of exon 8
gtcacttttcctctccatctttttatcaaaccttttttctgcacttcaattgtgcaaggaaagtcactgtagtcattacatgttcaacagGAAAAAAGTCCAAATATCAAATGCTTTCTGATTGACCCTCCTGGTTCTGGCTTGTTCAATAAGATAACAAGGGGAGTAATGTACACTAGAGAGGAGGCTG
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--------------------------------------------------------gtctgagttgtttcttgttctatgttctcaacagGAAAAGAATCCAAACATCAAGTGCTTCCTCGTAGATCCTCCTGGCTCTGGTTTGTTTAATAGGGTAACTAGGGCGGTGATGTACACCAAAGAGGAGGCAG
upper sequence: Vv19s0015g00380.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT1G55880.1 (Arabidopsis thaliana), 3'ss of exon 4
------------gtcacttttcctctccatctttttatcaaaccttttttc-tgcacttcaattgtgcaaggaaagtcactg--tagtcattacatgttcaacagGAAAAAAGTCCAAATATCAAATGCTTTCTGATTGACCCTCCTGGTTCTGGCTTGTTCAATAAGATAACAAGGGGAGTAATGTACACTAGAGAGGAGGCTG
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gtataattactcagggcttatactaatcaaagatgtaagaatgagtaattcgtggatgttataagcaaaagaaaaactcataacttgttggtgcat-ttatacagGATAAGAATGAAAGAGTTAAATGTTTTCTGATTGATCCTCCTGGATCTGGTCTGTACAATAAAGTAACACGGGGAGTGATGTACACAAGAGAAGAAGCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71858370|gb|DT007425.1|DT007425EST: CAGCTGCGGGAACTGGTGGCACTCTGGCTGGTGTTTCCCGGTCTCTCCAG GAAAAAAGTCCAAATATCAAATGCTTTCTGATTGACCCTCCTGGTTCTGGC
genomic: CAGCTGCGGGAACTGGTGGCACTCTGGCTGGTGTTTCCCGGTCTCTCCAGgtcacttttc ... tgttcaacagGAAAAAAGTCCAAATATCAAATGCTTTCTGATTGACCCTCCTGGTTCTGGC
EST:
gi|71858365|gb|DT007420.1|DT007420EST: CAGCTGCGGGAACTGGTGGCACTCTGGCTGGTGTTTCCCGGTCTCTCCAG GAAAAAAGTCCAAATATCAAATGCTTTCTGATTGACCCTCCTGGTTCTGGC
genomic: CAGCTGCGGGAACTGGTGGCACTCTGGCTGGTGTTTCCCGGTCTCTCCAGgtcacttttc ... tgttcaacagGAAAAAAGTCCAAATATCAAATGCTTTCTGATTGACCCTCCTGGTTCTGGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttctgcacttcaattgtgcaaggaaagtcactgtagtcattacatgttcaacagGAAAAAAGTCCAAATATCAAATGCTTTCTGATTGACCCTCCTGGTTCTGGCTTGTTCAATAAGATAACAAGGGGAGTAATGTACACTAGAGAGGAGGCTG
ttcaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcacttttcctctccatctttttatcaaaccttttttctgcacttcaattgtgcaaggaaagtcactgtagtcattacatgttcaacagGAAAAAAGTCCAAATATCAAATGCTTTCTGATTGACCCTCCTGGTTCTGGCTTGTTCAATAAGATAACAAGGGGAGTAATGTACACTAGAGAGGAGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG