1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tacatttgcctatcaaaaaagagagaggaaaaaaggaaaaaagaaaaagaaagagtggtgtatgtactgataaacttgttcttgttattatcatttgtagACAAGGAGCAACAGGAAAGGGCCAGAGACTTGACCATGAAAGGAAAGGAATAAGAGAGTCTCGAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTC
species | Vitis vinifera |
transcript | Vv19s0014g02670.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCTCCCAGCAAAGAGTTTGATGCAAAAGTACGAGATGAAGAAGCTAGAAG ACAAGGAGCAGCAGGAAAGGGCCAGAGACTTGACCATGAAAGGAAAGGAAT
genomic: CCTCCCAGCAAAGAGTTTGATGCAAAAGTACGAGATGAAGAAGCTAGAAGgtacttattg ... tcatttgtagACAAGGAGCAACAGGAAAGGGCCAGAGACTTGACCATGAAAGGAAAGGAAT
aaagaaagagtggtgtatgtactgataaacttgttcttgttattatcatttgtagACAAGGAGCAACAGGAAAGGGCCAGAGACTTGACCATGAAAGGAAAGGAATAAGAGAGTCTCGAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTC
tactgat putative branch site (score: 2)
ttgttattatcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacatttgcctatcaaaaaagagagaggaaaaaaggaaaaaagaaaaagaaagagtggtgtatgtactgataaacttgttcttgttattatcatttgtagACAAGGAGCAACAGGAAAGGGCCAGAGACTTGACCATGAAAGGAAAGGAATAAGAGAGTCTCGAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- catttgc
- - - - - - - aaaaaag
- - - - - - - - - - - - - -gaaaaaa
- - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - -agaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtatg