1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatatatagatattctgaatgcattgctattgctaattcattcaatagatgcggcactaaccattatggaattttattatgttaattagGGGTATGGTTCATGCATTGTCATTTGGAAAGACATTCCAGCTGGGGCATGGACACCGTTCTAATTGTGAAGAATGGAAGGACCAGATTAAGTAGTATGCT
species | Vitis vinifera |
transcript | Vv18s0164g00100.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCCACGAATGGGTGGGCTGCCATCAGATTCAGAGCTGATAATCCAG GGGTATGGTTCATGCATTGTCATTTGGAAAGACATTCCAGCTGGGGCATGGEST: gi|110427725|gb|EC994175.1|EC994175
genomic: CCCACGAATGGGTGGGCTGCCATCAGATTCAGAGCTGATAATCCAGgtatatatag ... tgttaattagGGGTATGGTTCATGCATTGTCATTTGGAAAGACATTCCAGCTGGGGCATGG
EST: AGTACCCACGAATGGGTGGGCTGCCATCAGATTCAGAGCTGATAATCCAG GGGTATGGTTCATGCATTGTCATTTGGAAAGACATTCCAGCTGGGGCATGGEST: gi|51050500|gb|CO818583.1|CO818583
genomic: AGTACCCACGAATGGGTGGGCTGCCATCAGATTCAGAGCTGATAATCCAGgtatatatag ... tgttaattagGGGTATGGTTCATGCATTGTCATTTGGAAAGACATTCCAGCTGGGGCATGG
EST: AGTACCCACGAATGGGTGGGCTGCCATCAGATTCAGAGCTGATAATCCAG GGGTATGGTTCATGCATTGTCATTTGGAAAGACATTCCAGCTGGGGCATGGEST: gi|110426707|gb|EC993125.1|EC993125
genomic: AGTACCCACGAATGGGTGGGCTGCCATCAGATTCAGAGCTGATAATCCAGgtatatatag ... tgttaattagGGGTATGGTTCATGCATTGTCATTTGGAAAGACATTCCAGCTGGGGCATGG
EST: AGTACCCACGAATGGGTGGGCTGCCATCAGATTCAGAGCTGATAATCCAG GGGTATGGTTCATGCATTGTCATTTGGAAAGACATTCCAGCTGGGGCATGGEST: gi|110716959|gb|EE092397.1|EE092397
genomic: AGTACCCACGAATGGGTGGGCTGCCATCAGATTCAGAGCTGATAATCCAGgtatatatag ... tgttaattagGGGTATGGTTCATGCATTGTCATTTGGAAAGACATTCCAGCTGGGGCATGG
EST: AGTACCCACGAATGGGTGGGCTGCCATCAGATTCAGAGCTGATAATC-AG GGGTATGGTTCATGCATTGTCATTTGGAAAGACATTCCAGCTGGGGCATGG
genomic: AGTACCCACGAATGGGTGGGCTGCCATCAGATTCAGAGCTGATAATCCAGgtatatatag ... tgttaattagGGGTATGGTTCATGCATTGTCATTTGGAAAGACATTCCAGCTGGGGCATGG
aattcattcaatagatgcggcactaaccattatggaattttattatgttaattagGGGTATGGTTCATGCATTGTCATTTGGAAAGACATTCCAGCTGGGGCATGGACACCGTTCTAATTGTGAAGAATGGAAGGACCAGATTAAGTAGTATGCT
cactaac putative branch site (score: 1)
attatggaattttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatatagatattctgaatgcattgctattgctaattcattcaatagatgcggcactaaccattatggaattttattatgttaattagGGGTATGGTTCATGCATTGTCATTTGGAAAGACATTCCAGCTGGGGCATGGACACCGTTCTAATTGTGAAGAATGGAAGGACCAGATTAAGTAGTATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG