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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaacaagttgatatctctatctgtctcaattttgatgaaagaatgtgaagttctcatattgcataatggaactcagGGATCTATCAAACAACCGCCTCTCAGGAGTGGTTCCAGACAATGGCTCTTTTTCATTATTTACCCCCATCAG

Basic information

species Vitis vinifera
transcript Vv18s0164g00070.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71873068|gb|DT022123.1|DT022123
EST:     ACGGGTACTATTCCTATGTCATTGACTAATATCACGGCTCTGCAAGTATT                         GGATCTATCAAACAACCGCCTCTCAGGAGTGGTTCCAGACAATGGCTCTTT
genomic: ACGGGTACTATTCCTATGTCATTGACTAATATCACGGCTCTGCAAGTATTgtgagtaaca ... tggaactcagGGATCTATCAAACAACCGCCTCTCAGGAGTGGTTCCAGACAATGGCTCTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtctcaattttgatgaaagaatgtgaagttctcatattgcataatggaactcagGGATCTATCAAACAACCGCCTCTCAGGAGTGGTTCCAGACAATGGCTCTTTTTCATTATTTACCCCCATCAG
        ttttgat  putative branch site (score: 4)
      aattttgat  TA-rich tract