Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatccgacaatatgaaaagcttacacctttatttcgaattatcaatttactcatttaagccaattggaaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG

Basic information

species Vitis vinifera
transcript Vv18s0122g01190.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0122g01190.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA06G01970.2 (Glycine max), 3'ss of exon 5
gtaagtatccgacaatatgaaaagcttac-acctttatttcgaattatcaatttactcatttaagccaattggaaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG
||| |||    ||  | |        ||  | |   | ||  | || |   |||  | ||| ||      |  |    || |||| || || || ||||| || ||  | || ||  ||||||| || |||||||||||||||| |||||||||||| ||||||
gtatgtagttcactgtttcttgtttatatgagcaacaattttagttttggcttttgttattgaaattttatacattg-tttagGAAAAAGCACCTTATGTGGCAAAGTCTGAGAAAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCCTATAACAAGAAACAG

upper sequence: Vv18s0122g01190.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA04G01840.1 (Glycine max), 3'ss of exon 5
gtaagt-atccgacaatatgaaaagcttacacctttatttcgaattatcaat-ttactcatttaagccaattggaaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG
||| ||  | | |   | |     | ||| |  |    ||   ||| | |   ||  | ||| ||      || ||   || |||| || || || ||||| || ||  | || ||  ||||||| || |||||||||||||||| ||| |||||||| ||||||
gtatgttgttcaatgttttttt--gtttataaatagcgtttagatttttagcatttgttattcaaattttatg-aattgtttagGAAAAAGCACCTTATGTGGCAAAGTCTGAGAAAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAG

upper sequence: Vv18s0122g01190.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA04G01840.5 (Glycine max), 3'ss of exon 5
gtaagt-atccgacaatatgaaaagcttacacctttatttcgaattatcaat-ttactcatttaagccaattggaaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG----
||| ||  | | |   | |     | ||| |  |    ||   ||| | |   ||  | ||| ||      || ||   || |||| || || || ||||| || ||  | || ||  ||||||| || |||||||||||||||| ||| |||||||| ||||||    
gtatgttgttcaatgttttttt--gtttataaatagcgtttagatttttagcatttgttattcaaattttatg-aattgtttagGAAAAAGCACCTTATGTGGCAAAGTCTGAGAAAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGGTTG

upper sequence: Vv18s0122g01190.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT1G20696.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaagtatccga----caatatgaaaagcttacacct-ttatttcgaat-tatcaa----tttactcatttaagccaattggaaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG
||| || | | |     | |  |  ||  ||     | |||  || | | | ||||    |||| | |  |  |    ||  || ||| |||||||||||||| ||||| || || || || ||||| || || || || |||||||||||||||||||| ||||| |||  |
gtacgttttctaagcttagttagccaaagttgtgtgtattaagtcaattgtttcaagcgttttattaacctgtgggtgttataataatgcagGAGAAGGCTCCTTATGTGGCTAAGGCTGACAAGCGCAAGGTTGAGTATGAGAAGAACATGAAAGCCTACAACAAGAAATTG

upper sequence: Vv18s0122g01190.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT1G20696.2 (Arabidopsis thaliana), 3'ss of exon 5
gtaagtatccga----caatatgaaaagcttacacct-ttatttcgaat-tatcaa----tttactcatttaagccaattggaaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG------
||| || | | |     | |  |  ||  ||     | |||  || | | | ||||    |||| | |  |  |    ||  || ||| |||||||||||||| ||||| || || || || ||||| || || || || |||||||||||||||||||| ||||| |||  |      
gtacgttttctaagcttagttagccaaagttgtgtgtattaagtcaattgtttcaagcgttttattaacctgtgggtgttataataatgcagGAGAAGGCTCCTTATGTGGCTAAGGCTGACAAGCGCAAGGTTGAGTATGAGAAGAACATGAAAGCCTACAACAAGAAATTGGTAATT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30135931|gb|CB921269.1|CB921269
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|351049301|gb|FQ429044.1|FQ429044
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCTAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|37189590|gb|CF608939.1|CF608939
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|71872246|gb|DT021301.1|DT021301
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|71866454|gb|DT015509.1|DT015509
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCATATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|71870392|gb|DT019447.1|DT019447
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|18458654|gb|BM436932.1|BM436932
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|71871903|gb|DT020958.1|DT020958
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCATATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|110422203|gb|EC988518.1|EC988518
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTTTATGTTTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|349812463|gb|FQ407082.1|FQ407082
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCTAAAGCAGAGAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|77587638|gb|DV222996.1|DV222996
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|349812462|gb|FQ407081.1|FQ407081
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCTAAAGCAGAGAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|349808030|gb|FQ402421.1|FQ402421
EST:     GTTGGCAAGGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCATATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|71870289|gb|DT019344.1|DT019344
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|71875149|gb|DT024204.1|DT024204
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|71869195|gb|DT018250.1|DT018250
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|71872390|gb|DT021445.1|DT021445
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|30321835|gb|CD005097.1|CD005097
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCTAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|110378901|gb|EC944058.1|EC944058
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCATATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|30136340|gb|CB921678.1|CB921678
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCTAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|34544994|gb|CF513226.1|CF513226
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|71870838|gb|DT019893.1|DT019893
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|37188038|gb|CF607389.1|CF607389
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCATATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|110701263|gb|EE078641.1|EE078641
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|110359145|gb|EC920159.1|EC920159
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|71877377|gb|DT026432.1|DT026432
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|37187271|gb|CF606624.1|CF606624
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCATATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|110727673|gb|EE104704.1|EE104704
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|27586818|gb|CB009513.1|CB009513
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCTAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|71871069|gb|DT020124.1|DT020124
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGC
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGC
EST: gi|30125574|gb|CB910913.1|CB910913
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|37188411|gb|CF607760.1|CF607760
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCTAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|71872295|gb|DT021350.1|DT021350
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCATATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|71877289|gb|DT026344.1|DT026344
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|37190659|gb|CF610008.1|CF610008
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|77584467|gb|DV221302.1|DV221302
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|71867293|gb|DT016348.1|DT016348
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|26266952|gb|CA818015.1|CA818015
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAG
EST: gi|71879402|gb|DT028457.1|DT028457
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCATATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|34545986|gb|CF514218.1|CF514218
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|349812002|gb|FQ410799.1|FQ410799
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCTAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|37189938|gb|CF609287.1|CF609287
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|30135991|gb|CB921329.1|CB921329
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|71873912|gb|DT022967.1|DT022967
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|110688346|gb|EE066794.1|EE066794
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|349822310|gb|FQ412574.1|FQ412574
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCATATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|37188583|gb|CF607932.1|CF607932
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCTAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|71869029|gb|DT018084.1|DT018084
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|110725319|gb|EE101688.1|EE101688
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|77579649|gb|DV218677.1|DV218677
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCATATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|37187855|gb|CF607208.1|CF607208
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCTAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|30125704|gb|CB911043.1|CB911043
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCTAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
EST: gi|37189435|gb|CF608784.1|CF608784
EST:     GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCC                         GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG
genomic: GTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCgtaagtatcc ... aaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacctttatttcgaattatcaatttactcatttaagccaattggaaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG
 agcttac  putative branch site (score: 3)
     tttatttcgaattatc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtatccgacaatatgaaaagcttacacctttatttcgaattatcaatttactcatttaagccaattggaaaaattcagGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC