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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttctcattgttcatttttaccatgaagtttgcagttacccagcatggaatttccagtgctgttgaattgttacatttgcttactgtaaaatcttcgatgtgcttatgatgcagATGCTGCAAGATTCAGGCTTACTCATGAGACCTCTTTTGTGAGGGATCACAGCAGTTTCTGGACTAAAACACCGTTCCTGTTTGTTATT

Basic information

species Vitis vinifera
transcript Vv18s0122g00910.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0122g00910.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA04G01710.1 (Glycine max), 3'ss of exon 6
gtttctcattgttcatttttaccatgaagtttgcagttacccagcatggaatttccagtgctgttgaattgttacatttgcttactgtaaaatcttcgatgtgcttatgatgcagATGCTGCAAGATTCAGGCTTACTCATGAGACCTCTTTTGTGAGGGATCACAGCAGTTTCTGGACTAAAACACCGTTCCTGTTTGTTATT
   |    |  |   |  ||| || | |||||  || | |         || |  ||    |  |   |  | ||| ||      | ||| |||||| || |        | ||||| ||  ||||||||| |||||||||||||| || |||||||||||||||| |||| ||||||||||||||||  |   |||   | ||
--gtaaagtaatgactcattaacaagtagtttctagcttc---------aagtatcatcagtactaggtcctcacagtt------tttaacatcttcaatatct-----gttcagATCCTAGAAGATTCAGACTTACTCATGAGACATCATTTGTGAGGGATCACAACAGTATCTGGACTAAAACACCAGTTTCGTTCTATCTT

upper sequence: Vv18s0122g00910.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA06G01800.1 (Glycine max), 3'ss of exon 5
gtttctcattgttcatttttaccatgaagtttgcagttacccagcatggaatttccagtgctgttgaattgttacatttgctta-ctgtaaaatcttcgatgtgcttatgatgcagATGCTGCAAGATTCAGGCTTACTCATGAGACCTCTTTTGTGAGGGATCACAGCAGTTTCTGGACTAAAACACC-GTTCCTGTTTGTTATT
                |    | ||||   |      ||    |  |  |  ||| |||    |     |  ||  |   |  |  | ||| ||| || || |        | ||||| ||  ||||||||| || ||||||||||| || |||||||||||||||| |||| |||||||||||||||| ||| |  | | || | 
---------------gtaaagctatgag--tcattaataatttgtttctagcttcaagtatcatcag--tactaggtccccacagttttaacatcctcaatatct-----gttcagATCCTAGAAGATTCAGACTCACTCATGAGACATCATTTGTGAGGGATCACAACAGTATCTGGACTAAAACACCAGTTTCCTTCTATTTT-


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttgaattgttacatttgcttactgtaaaatcttcgatgtgcttatgatgcagATGCTGCAAGATTCAGGCTTACTCATGAGACCTCTTTTGTGAGGGATCACAGCAGTTTCTGGACTAAAACACCGTTCCTGTTTGTTATT
                  tgcttac  putative branch site (score: 2)
                           taaaatctt  TA-rich tract