1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tacttgtgtaaataggttggaccacacatggaagacctgtggttttttttttttttggtacaaattttgttctgaaacctcttgttacttgtgtaaatagGTTGGACCAGAATATGCAAGATATTGTGGGATTGAAGCTTTGGAGCCTCTGGGAATTTACCTGCCTGGTGATATTAATTATCCAGGAGGAGCTCTTTTTG
species | Vitis vinifera |
transcript | Vv18s0122g00430.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGGAAGCCAAGGAGTAATTGTCATTGCTATTTGCCAAGCCCTGCTGATG GTTGGACCAGAATATGCAAGATATTGTGGGATTGAAACTTTGGAGCCTCTGEST: gi|122690646|gb|EC955583.1|EC955583
genomic: CTGGAAGCCAAGGAGTAATTGTCATTGCTATTTGCCAAGCCCTGCTGATGgtaagaattc ... gtgtaaatagGTTGGACCAGAATATGCAAGATATTGTGGGATTGAAGCTTTGGAGCCTCTG
EST: CTGGAAGCCAAGGAGTAATTGTCATTGCTATTTGCCAAGCCCTGCTGATG GTTGGACCAGAATATGCAAGATATTGTGGGATTGAAGCTTTGGAGCCTCTGEST: gi|122690609|gb|EC954944.1|EC954944
genomic: CTGGAAGCCAAGGAGTAATTGTCATTGCTATTTGCCAAGCCCTGCTGATGgtaagaattc ... gtgtaaatagGTTGGACCAGAATATGCAAGATATTGTGGGATTGAAGCTTTGGAGCCTCTG
EST: CTGGAAGCCAAGGAGTAATTGTCATTGCTATTTGCCAAGCCCTGCTGATG GTTGGACCAGAATATGCAAGATATTGTGGGATTGAAGCTTTGGAGCCTCTGEST: gi|110421925|gb|EC988231.1|EC988231
genomic: CTGGAAGCCAAGGAGTAATTGTCATTGCTATTTGCCAAGCCCTGCTGATGgtaagaattc ... gtgtaaatagGTTGGACCAGAATATGCAAGATATTGTGGGATTGAAGCTTTGGAGCCTCTG
EST: CTGGAAGCCAAGGAGTAATTGTCATTGCTATTTGCCAAGCCCTGCTGATG GTTGGACCAGAATATGCAAGATATTGTGGGATTGAAGCTTTGGAGCCTCTG
genomic: CTGGAAGCCAAGGAGTAATTGTCATTGCTATTTGCCAAGCCCTGCTGATGgtaagaattc ... gtgtaaatagGTTGGACCAGAATATGCAAGATATTGTGGGATTGAAGCTTTGGAGCCTCTG
tttttttttttggtacaaattttgttctgaaacctcttgttacttgtgtaaatagGTTGGACCAGAATATGCAAGATATTGTGGGATTGAAGCTTTGGAGCCTCTGGGAATTTACCTGCCTGGTGATATTAATTATCCAGGAGGAGCTCTTTTTG
tacaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacttgtgtaaataggttggaccacacatggaagacctgtggttttttttttttttggtacaaattttgttctgaaacctcttgttacttgtgtaaatagGTTGGACCAGAATATGCAAGATATTGTGGGATTGAAGCTTTGGAGCCTCTGGGAATTTACCTGCCTGGTGATATTAATTATCCAGGAGGAGCTCTTTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - -aaatagg
- - - - - - - - - - -ccacaca
- - - - - - - - - - - - - - -ggaagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaaac