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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaatgggccctcctgttaatgtggttttgtttctaatgaatttctagttacagttcatttttacctgaaaactgcagATCATTAAGGAACCGGCGGATGATGAAGGGGCACTGGATGCTTTTGTTTCCATTGTCACAGGCCCACCAGGGCCCAACCCAGTGCAGTTAATGCCAAGAC

Basic information

species Vitis vinifera
transcript Vv18s0089g01420.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77584623|gb|DV221395.1|DV221395
EST:     TATTATCAATTTATGGGAATAAGGAATCAGTGGATGAAGATCTGCTACAG                         ATCATTAAGGAACCGGCGGATGATGAAGGGGCACTGGATGCTTTTGTTTCC
genomic: TATTATCAATTTATGGGAATAAGGAATCAGTGGATGAAGATCTGCTACAGgtatgaatgg ... aaaactgcagATCATTAAGGAACCGGCGGATGATGAAGGGGCACTGGATGCTTTTGTTTCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttttgtttctaatgaatttctagttacagttcatttttacctgaaaactgcagATCATTAAGGAACCGGCGGATGATGAAGGGGCACTGGATGCTTTTGTTTCCATTGTCACAGGCCCACCAGGGCCCAACCCAGTGCAGTTAATGCCAAGAC
        ttctaat  putative branch site (score: 2)
       tttctaatgaattt  TA-rich tract