1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tattccttgtatttatttattttgtttgctattttactaagtttgcttgttcagtttatcacaaaactcatgcatgcatgcttttaaatttggcttatagGTTGCTGAGTTCAATGTACAAGCAGCTCAACAAGGGATGGTCTATATCGATGAAGTTGACAAGATAACTAAAAAG
species | Vitis vinifera |
transcript | Vv18s0089g01240.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGGTTATGTTGGAGAAGATGTTGAGTCAATATTATATAAATTGCTTACG GTTGCTGAGTTCAACGTACAAGCAGCTCAACAAGGGATGGTCTATATCGATEST: gi|71862340|gb|DT011395.1|DT011395
genomic: CTGGTTATGTTGGAGAAGATGTTGAGTCAATATTATATAAATTGCTTACGgtatgattat ... tggcttatagGTTGCTGAGTTCAATGTACAAGCAGCTCAACAAGGGATGGTCTATATCGAT
EST: CTGGTTATGTTGGAGAAGATGTTGAGTCAATATTATATAAATTGCTTACG GTTGCTGAGTTCAACGTACAAGCAGCTCAACAAGGGATGGTCTATATCGATEST: gi|110698280|gb|EE075629.1|EE075629
genomic: CTGGTTATGTTGGAGAAGATGTTGAGTCAATATTATATAAATTGCTTACGgtatgattat ... tggcttatagGTTGCTGAGTTCAATGTACAAGCAGCTCAACAAGGGATGGTCTATATCGAT
EST: AGAAGATGTTCAGTCAATATTATATAAATTGCTTACG GTTGCTGAGTTCAACGTACAAGCAGCTCAACAAGGGATGGTCTATATCGAT
genomic: AGAAGATGTTGAGTCAATATTATATAAATTGCTTACGgtatgattat ... tggcttatagGTTGCTGAGTTCAATGTACAAGCAGCTCAACAAGGGATGGTCTATATCGAT
cttgttcagtttatcacaaaactcatgcatgcatgcttttaaatttggcttatagGTTGCTGAGTTCAATGTACAAGCAGCTCAACAAGGGATGGTCTATATCGATGAAGTTGACAAGATAACTAAAAAG
atgcttttaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattccttgtatttatttattttgtttgctattttactaagtttgcttgttcagtttatcacaaaactcatgcatgcatgcttttaaatttggcttatagGTTGCTGAGTTCAATGTACAAGCAGCTCAACAAGGGATGGTCTATATCGATGAAGTTGACAAGATAACTAAAAAG
- ttccttg
- - - - - - - - - - - tgtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgct