Sequence
atgc intronic sequence ATGC exonic sequence...ttacctagtctacttattgtatatgatggatgctaaatttgtatgctcaaagccataaataatagtgttaataatgctttggctggtcctcttgttttagGTGAGTGACTATGCTCAGCACAATGATGCCATTTTGCTGGTTATTGTACCTGCTGCCCAGGCACCCGAAATTGCTTCATCTCGAGCTCTCAAAATTGCCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA12G37100.1 (Glycine max), 3'ss of exon 5
-----ttacctagtctacttattgtatatgatggatgctaaatttgtatgctcaaagccataaataat-----agtgttaataatgctttggctggtcctcttgttttagGTGAGTGACTATGCTCAGCACAATGATGCCATTTTGCTGGTTATTGTACCTGCTGCCCAGGCACCCGAAATTGCTTCATCTCGAGCTCTCAAAATTGCCA
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gtaaccttcccgaattgattcccacacttgttggtttttatttttttattttttat-cattgaacagttttggggttctgatgttatttaatgtggtccttgcat---agGTTAGCGAATATGCAGAGCACAATGATGCCATTTTGCTAGTTATTGTACCTGCAGCTCAAGCACCTGAAATTGCTTCATCTCGAGCCCTAAAATATGCAA
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G00430.1 (Glycine max), 3'ss of exon 5
ttacctagtctacttattgtatatgatgga-tgctaaatttgtatgctcaaagccataaataatagtgttaataatgctttggctggtcctcttgttttagGTGAGTGACTATGCTCAGCACAATGATGCCATTTTGCTGGTTATTGTACCTGCTGCCCAGGCACCCGAAATTGCTTCATCTCGAGCTCTCAAAATTGCCA
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----gtaaccttcccaaattaattcccaaacttcttggtttttgttattactgaacagttttgggattctgatgttatttaatgtggtcattgcat---agGTTAGCGAATATGCAGAGCATAATGATGCCATTTTGCTAGTTATTGTACCTGCAGTTCAAGCACCTGAAATTGCTTCATCTCGAGCCCTAAAATATGCAA
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT1G59610.1 (Arabidopsis thaliana), 3'ss of exon 5
-------------------------------------------------------ttacctagtctacttattgtatatgatggatgctaaatttgtatgctcaaagccataaataatagtgttaa-taatgctttggctggtcctcttgttt--tagGTGAGTGACTATGCTCAGCACAATGATGCCATTTTGCTGGTTATTGTACCTGCTGCCCAGGCACCCGAAATTGCTTCATCTCGAGCTCTCAAAATTGCCA
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gtaagcttaggaactgcttgatgcctttgtcatccccctaatccacctgtcaaccatggagaatttccacattttttattcggcattctggctgtagggcttcatagat-tcattatcattgtcatcttataatttgtttctctcctctctttgcaagATTGGTGAACATGCACAGCACAACGATGCTATATTGCTGGTTGTTGTGCCTGCTAGCCAGGCATCTGAAATTTCGTCATCTCGAGCCCTGAAGATCGCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161715464|gb|FC067082.1|FC067082EST: GGTTGATTTGCCTGGATTGGATCAACGGATTATGGATGAGACATTG GTGAGTGACTATGCTCAGCACAATGATGCCATTTTGCTGGTTATTGTACCT
genomic: GGTTGATTTGCCTGGATTGGATCAACGGATTATGGATGAGACATTGgtaagtggtg ... cttgttttagGTGAGTGACTATGCTCAGCACAATGATGCCATTTTGCTGGTTATTGTACCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctcaaagccataaataatagtgttaataatgctttggctggtcctcttgttttagGTGAGTGACTATGCTCAGCACAATGATGCCATTTTGCTGGTTATTGTACCTGCTGCCCAGGCACCCGAAATTGCTTCATCTCGAGCTCTCAAAATTGCCA
tgttaat putative branch site (score: 3)
tcctcttgtttt putative PPT
ataaataatagtgtta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttacctagtctacttattgtatatgatggatgctaaatttgtatgctcaaagccataaataatagtgttaataatgctttggctggtcctcttgttttagGTGAGTGACTATGCTCAGCACAATGATGCCATTTTGCTGGTTATTGTACCTGCTGCCCAGGCACCCGAAATTGCTTCATCTCGAGCTCTCAAAATTGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - -ggatgct
- - - - - - - - - - - - - - - - - - - - gtatgct
- - - - - - - - - - - - - - - - - - - - - - - - aaagcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggctgg