Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttccttagatctctctccccaaattgagaatttctacaccatgtgtttggatttattttacagtttcttacgctgggaacatgcaatatctgcagGTGAATGTTACAGCAGATCATCGGGTAATATATGGTGCTGATCTGGCTTCTTTCTTGCAAACCTTGGCCAAGATTATAGAAGACCCCAAAGATCTTACTT

Basic information

species Vitis vinifera
transcript Vv18s0072g01000.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA20G31630.1 (Glycine max), 3'ss of exon 6
gtaattttccttagatctctctccccaaattgagaatttctacaccat-----gtgtttggatttattt------tacagtttcttac-gctgggaacatgcaatatctgcagGTGAATGTTACAGCAGATCATCGGGTAATATATGGTGCTGATCTGGCTTCTTTCTTGCAAACCTTGGCCAAGATTATAGAAGACCCCAAAGATCTTACTT
|| |   |||  | || | | |  | |     |  | || |  |   |        | |  ||  | ||      | | |||| |||  | ||   | |||||| || ||||||| |||||||| || |||||||| ||||| |||||||||||| ||||||| |||||||||||| || || ||||||| || |||||||||||||||||||
gtgagagtccaaacatttgtgtatctaggagtatgacttatttattgttagaaaaatgtaaatccagttccagacttctgtttattatagttgaagaaatgcaa-atttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCATTCTTGCAAACCCTGTCCCAGATTATTGAGGACCCCAAAGATCTTACTT

upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G35960.1 (Glycine max), 3'ss of exon 6
--gtaattttccttagatctctctccccaaattgagaatttctacaccatgtg-----tttggatttattttacagtttc---ttac----gctgggaacatgcaatatctgcagGTGAATGTTACAGCAGATCATCGGGTAATATATGGTGCTGATCTGGCTTCTTTCTTGCAAACCTTGGCCAAGATTATAGAAGACCCCAAAGATCTTACTT
   | |   |||  | || | | |  | |     |  | || |  |   |  |     | |  ||  | ||      |||   ||||     |||   | |||||| || ||||||| |||||||| || |||||||| ||||| |||||||||||| ||||||| |||||||||||| || || ||||||| || |||||||||||||||||||
gtatgagagtccagacatttgtgtatctaggagtatgacttatttattgttagaaaaatgtaaatccagttccagacttctgtttaccataactgaagaaatgcaa-atttgcagGTCAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCATTCTTGCAAACCCTGACCCAGATTATTGAGGACCCCAAAGATCTTACTT

upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT1G34430.1 (Arabidopsis thaliana), 3'ss of exon 5
-------------gtaattttccttagatctctctccccaaattgagaatttctacaccatg-tgtttgga-tttattttacagtttctta-----cgctgggaacatgcaatatctgcagGTGAATGTTACAGCAGATCATCGGGTAATATATGGTGCTGATCTGGCTTCTTTCTTGCAAACCTTGGCCAAGATTATAGAAGACCCCAAAGATCTTACTT
               ||   || ||||| ||   ||| |   |      | ||| ||  |    || | || |||   |   |  || |||       ||||  || ||||| | |  ||||||||||| || ||||||||||| || || |||||||||||||| ||    ||||||||||| ||||| |  ||||| || ||||| || || ||||| |
gtaaatgttattatcaaccatcgttagaacttgttcctcttctcctttttgtcttcatgaaaacgtctcgagttttcctgggaacttgttaatgatgactggtcacttgcaa-acccacagGTGAATGTGACGGCAGATCATCGTGTCATCTATGGTGCTGATCTTGCACAGTTCTTGCAAACATTGGCAAGCATTATTGAGGACCCAAAGGACCTTACAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110383970|gb|EC948379.1|EC948379
EST:     CCGTTGTTGCCACCAAGGATGGTCGGATTGGCATGAAGAGCCAGATGCAG                         GTGAATGTTACAGCAGATCATCGGGTAATATATGGTGCTGATCTGGCTTCT
genomic: CCGTTGTTGCCACCAAGGATGGTCGGATTGGCATGAAGAGCCAGATGCAGgtaattttcc ... atatctgcagGTGAATGTTACAGCAGATCATCGGGTAATATATGGTGCTGATCTGGCTTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtgtttggatttattttacagtttcttacgctgggaacatgcaatatctgcagGTGAATGTTACAGCAGATCATCGGGTAATATATGGTGCTGATCTGGCTTCTTTCTTGCAAACCTTGGCCAAGATTATAGAAGACCCCAAAGATCTTACTT
                        ttcttac  putative branch site (score: 2)
          atttattttacagttt  TA-rich tract