Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taagtaataatagccctatgtttgtatactcaatctcacaggatgccaacattgctaccgtaactaatatcattgtttctttacttggataataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGTGAAGGATGATTATGTGATGATCAAGGGTTGCTGTGTTGGGCCTAAGAAG

Basic information

species Vitis vinifera
transcript Vv18s0072g00340.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0072g00340.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os11g06750.1 (Oryza sativa), 3'ss of exon 5
------------------taagtaataatagccct--atgtttgtatac------tcaatctcacaggatgccaacattgctaccgtaactaatatcattgtttctttacttggataataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGTGAAGGATGATTATGTGATGATCAAGGGTTGCTGTGTTGGGCCTAAGAAG
                   |  | | |  ||| ||  ||| ||| | |       ||  | | | | | |        || |  ||     ||  | |  | |  | | ||||          |||||| ||||| ||||| ||||| |||||||| ||||||||||||||||| |||||||  || ||  | ||||||||||||||||||||||| || ||||||
gtaccaattcgtctaccagatattacaccagcactccatgattgcaaatctgtcttctgtttgatatgctattgcatctgtttgcgagcgaaacttaaacgatattgtgcttgctcttgcgctcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCTCACTACGGTGTTGTGAAGGGCGACTACCTCATGATCAAGGGTTGCTGTGTTGGCCCCAAGAAG

upper sequence: Vv18s0072g00340.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os12g07010.1 (Oryza sativa), 3'ss of exon 5
-taagtaataatagccctatgtttgtatactcaatctcacaggatgccaacattgctaccgtaactaatatcattgtttctttacttggataataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGTGAAGGATGATTATGTGATGATCAAGGGTTGCTGTGTTGGGCCTAAGAAG
 ||   |    |||    | ||||| |  |      | |    |||    |||| | |   |||    | | ||    |||   |||      |    |||||| ||||| ||||| || || ||||| || ||||| |||||||||||||||||||  || ||  | ||||||||||||||||| || || || ||||||
gtatacatctttaga---acgtttgaaggccttgagtaatgttatgt--gcatt-ccattctaag-gttgtgatgacatctgacctttctcccttg--cagGACTGAGAAGGACATCACCCCGATGGGCGGCTTCCCGCACTACGGTGTGGTGAAGGGCGACTACCTCATGATCAAGGGTTGCTGCGTCGGTCCGAAGAAG

upper sequence: Vv18s0072g00340.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G132968_T02 (Zea mays), 3'ss of exon 5
taagtaataatagccctatgtttgtatactcaatctcacaggatgccaacattgctaccgtaactaatatcattgtttctttacttggataataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGTGAAGGATGATTATGTGATGATCAAGGGTTGCTGTGTTGGGCCTAAGAAG
       || ||   ||  | || | |   | | ||  ||      |||  |   |||| |   |  | |  ||| ||    | |      ||    |||||||||||| ||||| ||||| |||||||| ||||| ||||| ||| | ||||||| ||| ||  ||||||||||||| |||||||| || || ||||||
------gtactatttctgagcttct-tgtactaacttgca------caatctgtttacctttgttgctcttgttggttacggattgctgccatttg-cagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGTGAAGGGTGACTACCTGATGATCAAGGGATGCTGTGTGGGTCCAAAGAAG

upper sequence: Vv18s0072g00340.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G135727_T01 (Zea mays), 3'ss of exon 5
taagtaataatagccctatgtttgtatactcaatctcacaggatgccaacattgctaccgtaactaatatcattgtttctttacttggataataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGTGAAGGATGATTATGTGATGATCAAGGGTTGCTGTGTTGGGCCTAAGAAG
       || ||   ||  | || | |   | | ||  ||      |||  |   |||| |   |  | |  ||| ||    | |      ||    |||||||||||| ||||| ||||| |||||||| ||||| ||||| ||| | ||||||| ||| ||  ||||||||||||| |||||||| || || ||||||
------gtactatttctgagcttct-tgtactaacttgca------caatctgtttacctttgttgctcttgttggttacgaattgctgccatttg-cagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGTGAAGGGTGACTACCTGATGATCAAGGGATGCTGTGTGGGTCCAAAGAAG

upper sequence: Vv18s0072g00340.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G361049_T01 (Zea mays), 3'ss of exon 11
taagtaataatagccctatgtttgtatactcaatctcacaggatgccaacattgctaccgtaactaatatcattgtttctttacttggataataaa-----acagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGTGAAGGATGATTATGTGATGATCAAGGGTTGCTGTGTTGGGCCTAAGAAG
                       |||| ||  ||             ||||||| |  |     | |  |   |  |||  |   || ||  |        ||||||||||||| ||||| ||||| |||||||||||||| ||||||||| |  | ||||  || ||  ||||||||||||||||||| || || || ||||| 
-----------------------gtatccttgattcactgcagcagtaacattgttcacaatcttgagtttgctccttcagtttctgaatgctggttgtttacagGACCGAGAAGGACATCACTCCCATGGGTGGTTTCCCCCACTACGGTATCATCAAGGGCGACTACCTGATGATCAAGGGTTGCTGCGTCGGCCCCAAGAAA

upper sequence: Vv18s0072g00340.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G109677_T04 (Zea mays), 3'ss of exon 6
taagtaataatagccctatgtttgt-atactcaatctcacaggatgccaacatt-gctaccgtaactaatatcattgtttctttacttggataataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGTGAAGGATGATTATGTGATGATCAAGGGTTGCTGTGTTGGGCCTAAGAAG
       || ||   ||  | || |  |||| | |  ||||   ||   || || | | |  |   |  || |    |      | |||          |||||| ||||| ||||| ||||| |||||||| ||||| || || ||| | ||||||| ||| ||  ||||||||||||| |||||||| || || ||||||
------gtactatttctgagcttcttgtactaacttgcacaatctgtttacctttgttgctcttgttggtaacgaattgctgccatttg----------cagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGTGAAGGGTGACTACCTGATGATCAAGGGCTGCTGTGTGGGTCCAAAGAAG

upper sequence: Vv18s0072g00340.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G324314_T05 (Zea mays), 3'ss of exon 5
taagtaataatagccctatgtttgtatactcaatctcacaggatgccaacatt-gctaccgtaactaatatcattgtttctttacttggataataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGTGAAGGATGATTATGTGATGATCAAGGGTTGCTGTGTTGGGCCTAAGAAG
       || ||   ||  | |||||  || | |  ||||   ||   || || | | |  |   |  || |    |      | |||          |||||| ||||| ||||| ||||| |||||||| ||||| || || ||| | ||||||| ||| ||  ||||||||||||| |||||||| || || ||||||
------gtactatttctgagcttgta--ctaacttgcacaatctgtttacctttgttgctcttgttggtaacgaattgctgccatttg----------cagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGTGAAGGGTGACTACCTGATGATCAAGGGCTGCTGTGTGGGACCAAAGAAG

upper sequence: Vv18s0072g00340.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM5G801409_T04 (Zea mays), 3'ss of exon 4
taagtaataat-agccctatgtttgtatactcaatctcacaggatgccaacatt-gctaccgtaactaatatcattgtttctttacttggataataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGTGAAGGATGATTATGTGATGATCAAGGGTTGCTGTGTTGGGCCTAAGAAG
  | || |  | |||    |||   | |||| | |  ||||   ||   || || | | |  |   |  || |    |      | |||          |||||| ||||| ||||| ||||| |||||||| ||||| || || ||| | ||||||| ||| ||  ||||||||||||| |||||||| || || ||||||
gtactatttctgagcttcttgtacatgtactaacttgcacaatctgtttacctttgttgctcttgtttgtaacgaattgctgccatttg----------cagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGTGAAGGGTGACTACCTGATGATCAAGGGCTGCTGTGTGGGTCCAAAGAAG

upper sequence: Vv18s0072g00340.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 5
-taagtaataatagccc---tatgtttgtatactcaatctcacaggat-gccaacattgctaccgtaactaatatcattgtttctttacttggataataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGTGAAGGATGATTATGTGATGATCAAGGGTTGCTGTGTTGGGCCTAAGAAG
 | |||  |     |     |||| || | | |   |  | |  | |  ||    | | ||   ||    | |   |||    || ||||||  |  | |  |||||||||||||||||| || ||||||||||||||||||||||| ||||| || |||||||||| | | ||| ||||||| ||||||||||| || ||||||
gttagtgttgtcttcttgattatggttttgtgcagtaaattattgaacagcaggaagtactttggttgtaagtcaaattaaccctctacttgttttctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGTTAAGGATGATTTTATCATGGTCAAGGGATGCTGTGTTGGTCCCAAGAAG

upper sequence: Vv18s0072g00340.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA20G30810.1 (Glycine max), 3'ss of exon 5
-taagtaat--aatagccctatgtttgtatactcaatctcacaggatgccaacattgctaccgtaactaatatcattgtttctttacttggataataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGTGAAGGATGATTATGTGATGATCAAGGGTTGCTGTGTTGGGCCTAAGAAG
 |||||  |    |     |   |||||  | | ||| |  |||||    |  |||      |||| | | |  |      || ||||||  |  | |  |||||||||||||||||| || ||||| ||||||||||||||||| ||||| || |||||||||||| | ||| ||||||| ||||| ||||| || ||||| 
gtaagtgttttgttgattatggttttgtgcaataaatttagcagga----agtattttgtttgtaagtcaaacta--acccctctacttgttttctgattcagGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGTTAAGGATGATTATATCATGGTCAAGGGATGCTGCGTTGGTCCCAAGAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71883548|gb|DT032603.1|DT032603
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|71879399|gb|DT028454.1|DT028454
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|46910986|gb|CN546361.1|CN546361
EST:     TGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: TGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|34544403|gb|CF512635.1|CF512635
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|110426684|gb|EC993102.1|EC993102
EST:     CTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|351013390|gb|FQ425421.1|FQ425421
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACAGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|110695166|gb|EE072871.1|EE072871
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|71886289|gb|DT035344.1|DT035344
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|22009523|gb|BQ794557.1|BQ794557
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|110696190|gb|EE075063.1|EE075063
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|351027003|gb|FQ439863.1|FQ439863
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGGTGG
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTG-TGG
EST: gi|110703075|gb|EE079603.1|EE079603
EST:     CTTGGCAAGATTGAGAAGGAGTCTCACACTGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|351033299|gb|FQ446531.1|FQ446531
EST:     CTTGGCAAGATTGAGCAGGAGTCTCGCACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|110421655|gb|EC987955.1|EC987955
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|27585585|gb|CB008280.1|CB008280
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|71871964|gb|DT021019.1|DT021019
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACTGCCCTCACTGAGTTTGACAG                         GACTGAGAAAGACATAACTCCGATGGGTGGTTTCCCTCACTATGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|33401713|gb|CF207340.1|CF207340
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|110363881|gb|EC927510.1|EC927510
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACTGCCCTCACTGAGTTTGACAG                         GACTGAGAAAGACATAACTCCGATGGGTGGTTTCCCTCACTATGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|71875558|gb|DT024613.1|DT024613
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACTGCCCTCACTGAGTTTGACAG                         GACTGAGAAAGACATAACTCCGATGGGTGGTTTCCCTCACTATGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|110364936|gb|EC928554.1|EC928554
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACTGCCCTCACTGAGTTTGACAG                         GACTGAGAAAGACATAACTCCGATGGGTGGTTTCCCTCACTATGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|71877812|gb|DT026867.1|DT026867
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|351040455|gb|FQ434588.1|FQ434588
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGGTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|110696314|gb|EE075067.1|EE075067
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGA-ATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|161714223|gb|FC064138.1|FC064138
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|110703884|gb|EE081209.1|EE081209
EST:     CTTGGCAAGATTGAGAAGGAGTCTCACACTGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|30125354|gb|CB910693.1|CB910693
EST:     GTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: GTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|30303853|gb|CB980647.1|CB980647
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|71875064|gb|DT024119.1|DT024119
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACTGCCCTCACTGAGTTTGACAG                         GACTGAGAAAGACATAACTCCGATGGGTGGTTTCCCTCACTATGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|161720318|gb|FC071171.1|FC071171
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|27583886|gb|CB006581.1|CB006581
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|156735646|gb|EV239767.1|EV239767
EST:     CTTGGCAAGATTGAGAAGGAGTCTCACACTGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|110410380|gb|EC976061.1|EC976061
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|45770557|gb|CN006409.1|CN006409
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|30300128|gb|CB976922.1|CB976922
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACCCCGCCCTCACTGAGTTTGCCAG                         GCCCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|22013037|gb|BQ798071.1|BQ798071
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|71868757|gb|DT017812.1|DT017812
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACTGCCCTCACTGAGTTTGACAG                         GACTGAGAAAGACATAACTCCGATGGGTGGTTTCCCTCACTATGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|110389391|gb|EC954224.1|EC954224
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|110387090|gb|EC951733.1|EC951733
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACTGCCCTCACTGAGTTTGACAG                         GACTGAGAAAGACATAACTCCGATGGGTGGTTTCCCTCACTATGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|30300056|gb|CB976850.1|CB976850
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|33401699|gb|CF207326.1|CF207326
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|30125308|gb|CB910647.1|CB910647
EST:     GTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: GTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|110687504|gb|EE064992.1|EE064992
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|110417717|gb|EC983793.1|EC983793
EST:     CTTGGCAAGATTGAGAAGGAGTCTCACACTGCCCTCACTGAGTTAGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|45770591|gb|CN006443.1|CN006443
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|110707030|gb|EE083072.1|EE083072
EST:     CTTGGCAAGATTGAGAAGGAGTCTCACACTGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|110696434|gb|EE072547.1|EE072547
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|351032116|gb|FQ460373.1|FQ460373
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|22011406|gb|BQ796440.1|BQ796440
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|45771173|gb|CN007025.1|CN007025
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|32460979|gb|CD802153.1|CD802153
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
EST: gi|22009615|gb|BQ794649.1|BQ794649
EST:     CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAG                         GACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT
genomic: CTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaact ... aataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaacattgctaccgtaactaatatcattgtttctttacttggataataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGTGAAGGATGATTATGTGATGATCAAGGGTTGCTGTGTTGGGCCTAAGAAG
                aactaat  putative branch site (score: 2)
               taactaatatcatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taagtaataatagccctatgtttgtatactcaatctcacaggatgccaacattgctaccgtaactaatatcattgtttctttacttggataataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGTGAAGGATGATTATGTGATGATCAAGGGTTGCTGTGTTGGGCCTAAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - cctatgt
- - - - - - - - - - - - - - - caatctc
- - - - - - - - - - - - - - - - - - - - - - gccaaca
- - - - - - - - - - - - - - - - - - - - - - - - - -ttgctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactaat