1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...atatctgaattgattgttcaaagttttctacttttgggcacttcttgtatcttttaaaatatttctcctttcaaagctctcatttgacattcatttgcagCTTTTGTAGATGTTTCTCCAGAAGAAACGCTGCAAGAGAGTCCTTTTGAAAATTTTGAAGAATCAACTGAGACAAGTTCATCCAAGGATGCACAGTTTTC
species | Vitis vinifera |
transcript | Vv18s0041g01360.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TACAGATGTCAAAGATGACATTGAAAAGAAGAATGAACAAAACAAATATG CTTTTGTAGATGTTTCTCCAGAAGAAACGCTGCAAGAGAGTCCTTTTGAAAEST: gi|110699715|gb|EE076966.1|EE076966
genomic: TACAGATGTCAAAGATGACATTGAAAAGAAGAATGAACAAAACAAATATGgtataaaaag ... tcatttgcagCTTTTGTAGATGTTTCTCCAGAAGAAACGCTGCAAGAGAGTCCTTTTGAAA
EST: TACAGATGTCAAAGATGACATTGAAAAGAAGAATGAACAAAACAAATATG CTTTTGTAGATGTTTCTCCAGAAGAAACGCTGCAAGAGAGTCCTTTTGAAAEST: gi|30136598|gb|CB921936.1|CB921936
genomic: TACAGATGTCAAAGATGACATTGAAAAGAAGAATGAACAAAACAAATATGgtataaaaag ... tcatttgcagCTTTTGTAGATGTTTCTCCAGAAGAAACGCTGCAAGAGAGTCCTTTTGAAA
EST: TACAGATGTCAAAGATGACATTGAAAAGAAGAATGAACAAAACAAATATG CTTTTGTAGATGTTTCTCCAGAAGAAACGCTGCAAGAGAGTCCTTTTGAAAEST: gi|30136267|gb|CB921605.1|CB921605
genomic: TACAGATGTCAAAGATGACATTGAAAAGAAGAATGAACAAAACAAATATGgtataaaaag ... tcatttgcagCTTTTGTAGATGTTTCTCCAGAAGAAACGCTGCAAGAGAGTCCTTTTGAAA
EST: TACAGATGTCAAAGATGACATTGAAAAGAAGAATGAACAAAACAAATATG CTTTTGTAGATGTTTCTCCAGAAGAAACGCTGCAAGAGAGTCCTTTTGAAAEST: gi|30126394|gb|CB911733.1|CB911733
genomic: TACAGATGTCAAAGATGACATTGAAAAGAAGAATGAACAAAACAAATATGgtataaaaag ... tcatttgcagCTTTTGTAGATGTTTCTCCAGAAGAAACGCTGCAAGAGAGTCCTTTTGAAA
EST: TACAGATGTCAAAGATGACATTGAAAAGAAGAATGAACAAAACAAATATG CTTTTGTAGATGTTTCTCCAGAAGAAACGCTGCAAGAGAGTCCTTTTGAAA
genomic: TACAGATGTCAAAGATGACATTGAAAAGAAGAATGAACAAAACAAATATGgtataaaaag ... tcatttgcagCTTTTGTAGATGTTTCTCCAGAAGAAACGCTGCAAGAGAGTCCTTTTGAAA
tgtatcttttaaaatatttctcctttcaaagctctcatttgacattcatttgcagCTTTTGTAGATGTTTCTCCAGAAGAAACGCTGCAAGAGAGTCCTTTTGAAAATTTTGAAGAATCAACTGAGACAAGTTCATCCAAGGATGCACAGTTTTC
atttgac putative branch site (score: 4)
ttcattt CT-rich tract
ttttaaaatatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatctgaattgattgttcaaagttttctacttttgggcacttcttgtatcttttaaaatatttctcctttcaaagctctcatttgacattcatttgcagCTTTTGTAGATGTTTCTCCAGAAGAAACGCTGCAAGAGAGTCCTTTTGAAAATTTTGAAGAATCAACTGAGACAAGTTCATCCAAGGATGCACAGTTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - -ttttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agctctc