1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttctattttgtgtctattggatgccagttgattggatactattaggaagtttgtaccatttggaaggtatcgacaatatcgtgattgtatctttcttcagGAAAGTGAGAGGGTTGTCACCAAAAAAGAGGGAATCGACTTTGCTAGAGAATATGGATGCCTTTTTCTCGAATGCAGTGCAAAAACTCGGGTAAATGTAG
species | Vitis vinifera |
transcript | Vv18s0001g15090.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAACAAATCAAGATTGCATCAAGATGCTCGTTGGCAACAAAGTTGATAAG GAAAGTGAGAGGGTTGTCACCAAAAAAGAGGGAATCGACTTTGCTAGAGAAEST: gi|32246016|gb|CD711835.1|CD711835
genomic: CAACAAATCAAGATTGCATCAAGATGCTCGTTGGCAACAAAGTTGATAAGgtatatattt ... ctttcttcagGAAAGTGAGAGGGTTGTCACCAAAAAAGAGGGAATCGACTTTGCTAGAGAA
EST: CAACAAATCAAGATTGCATCAAGATGCTCGTTGGCAACAAAGTTGATAAG GAAAGTGAGAGGGTTGTCACCAAAAAAGAGGGAATCGACTTTGCTAGAGAAEST: gi|32245511|gb|CD711330.1|CD711330
genomic: CAACAAATCAAGATTGCATCAAGATGCTCGTTGGCAACAAAGTTGATAAGgtatatattt ... ctttcttcagGAAAGTGAGAGGGTTGTCACCAAAAAAGAGGGAATCGACTTTGCTAGAGAA
EST: CAACAAATCAAGATTGCATCAAGATGCTCGTTGGCAACAAAGTTGATAAG GAAAGTGAGAGGGTTGTCACCAAAAAAGAGGGAATCGACTTTGCTAGAGAAEST: gi|30136832|gb|CB922170.1|CB922170
genomic: CAACAAATCAAGATTGCATCAAGATGCTCGTTGGCAACAAAGTTGATAAGgtatatattt ... ctttcttcagGAAAGTGAGAGGGTTGTCACCAAAAAAGAGGGAATCGACTTTGCTAGAGAA
EST: CAACAAATCAAGATTGCATCAAGATGCTCGTTGGCAACAAAGTTGATAAG GAAAGTGAGAGGGTTGTCACCAAAAAAGAGGGAATCGACTTTGCTAGAGAAEST: gi|110731009|gb|EE108741.1|EE108741
genomic: CAACAAATCAAGATTGCATCAAGATGCTCGTTGGCAACAAAGTTGATAAGgtatatattt ... ctttcttcagGAAAGTGAGAGGGTTGTCACCAAAAAAGAGGGAATCGACTTTGCTAGAGAA
EST: CAACAAATCAAGATTGCATCAAGATGCTCGTTGGCAACAAAGTTGATAAG GAAAGTGAGAGGGTTGTCACCAAAAAAGAGGGAATCGACTTTGCTAGAGAAEST: gi|110724343|gb|EE100090.1|EE100090
genomic: CAACAAATCAAGATTGCATCAAGATGCTCGTTGGCAACAAAGTTGATAAGgtatatattt ... ctttcttcagGAAAGTGAGAGGGTTGTCACCAAAAAAGAGGGAATCGACTTTGCTAGAGAA
EST: CAACAAATCAAGATTGCATCAAGATGCTCGTTGGCAACAAAGTTGATAAG GAAAGTGAGAGGGTTGTCACCAAAAAAGAGGGAATCGACTTTGCTAGAGAAEST: gi|229418793|gb|GO653030.1|GO653030
genomic: CAACAAATCAAGATTGCATCAAGATGCTCGTTGGCAACAAAGTTGATAAGgtatatattt ... ctttcttcagGAAAGTGAGAGGGTTGTCACCAAAAAAGAGGGAATCGACTTTGCTAGAGAA
EST: CAACAAATCAAGATTGCATCAAGATGCTCGTTGGCAACAAAGTTGATAAG GAAAGTGAGAGGGTTGTCACCAAAAAAGAGGGAATCGACTTTGCTAGAGAAEST: gi|110394327|gb|EC959107.1|EC959107
genomic: CAACAAATCAAGATTGCATCAAGATGCTCGTTGGCAACAAAGTTGATAAGgtatatattt ... ctttcttcagGAAAGTGAGAGGGTTGTCACCAAAAAAGAGGGAATCGACTTTGCTAGAGAA
EST: CAACAAATCAAGATTGCATCAAGATGCTCGTTGGCAACAAAGTTGATAAG GAAAGTGAGAGGGTTGTCACCAAAAAAGAGGGAATCGACTTTGCTAGAGAA
genomic: CAACAAATCAAGATTGCATCAAGATGCTCGTTGGCAACAAAGTTGATAAGgtatatattt ... ctttcttcagGAAAGTGAGAGGGTTGTCACCAAAAAAGAGGGAATCGACTTTGCTAGAGAA
gaagtttgtaccatttggaaggtatcgacaatatcgtgattgtatctttcttcagGAAAGTGAGAGGGTTGTCACCAAAAAAGAGGGAATCGACTTTGCTAGAGAATATGGATGCCTTTTTCTCGAATGCAGTGCAAAAACTCGGGTAAATGTAG
ttgtatctttcttc CT-rich tract
acaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctattttgtgtctattggatgccagttgattggatactattaggaagtttgtaccatttggaaggtatcgacaatatcgtgattgtatctttcttcagGAAAGTGAGAGGGTTGTCACCAAAAAAGAGGGAATCGACTTTGCTAGAGAATATGGATGCCTTTTTCTCGAATGCAGTGCAAAAACTCGGGTAAATGTAG
- - - - - - - - - ggatgcc
- - - - - - - - - - - - - - tgattgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatttg