Sequence
atgc intronic sequence ATGC exonic sequencegtgaatctctaactagttaaagtgatgttccaaatcatggtttagatttctaatgttattttaacaagtgttttcctgattcagATTATTAGTACTGAGTGGGGGGCATTCTCAAATGGTCTACCTTTAACTGAGTTTGACAGAGATATGGATGCTGCTAGTATCAATCCTGGTGAGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g14230.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os07g09890.1 (Oryza sativa), 3'ss of exon 5
----------------gtgaat-ctctaactagttaaagtgatgttccaaatcatggtttagatttctaatgttattttaacaagtgttttcctgattcagATTATTAGTACTGAGTGGGGGGCATTCTCAAATGGTCTACCTTTAACTGAGTTTGACAGAGATATGGATGCTGCTAGTATCAATCCTGGTGAGCAG
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gtatgccataacatagacaaattctctattaagttattgcaaa--tggaaagtgttacgaagttaaggaatttt-tcttgatggaagtctctgtactgcagATTATTAACACTGAGTGGGGAGCTTTCTCAGATGGACTTCCATTGACTGAATTTGACAGAGAAATGGATGATGAGAGCATAAATCCTGGTGAACAG
upper sequence: Vv18s0001g14230.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA14G40440.1 (Glycine max), 3'ss of exon 5
--------------gtgaatct---ctaactagttaaagtgatgttccaaatcatggtttagatttcta----atgttattttaacaagtgt-tttcctgattcagATTATTAGTACTGAGTGGGGGGCATTCTCAAATGGTCTACCTTTAACTGAGTTTGACAGAGATATGGATGCTGCTAGTATCAATCCTGGTGAGCAG
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gttaataaatacttacacaccttcattaatttcttcatatcttgttctaatgctatagatgaactactagatcatcttaatctgagaaaagcattccttgattcagATCATTAGCACTGAGTGGGGTGCTTTCTCAAATGGTCTCCCTTTAACCAAGTTCGATAGGGAAATGGATGCTGCTAGCATCAATCCGGGCGAGCAG
upper sequence: Vv18s0001g14230.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA17G37720.1 (Glycine max), 3'ss of exon 5
-----------gtgaatctctaactagttaaagtgatgttccaaatcatggtttagatttc-taatgttattttaacaagtgt-tttcctgatt--cagATTATTAGTACTGAGTGGGGGGCATTCTCAAATGGTCTACCTTTAACTGAGTTTGACAGAGATATGGATGCTGCTAGTATCAATCCTGGTGAGCAG-
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ttaataaacacttatctcctttgtttcatcatatcttgttttaatgctttatatgaactagatcatcttaatctgagaaaaacattccttgattctcagaTCATTAGCACTGAGTGGGGTGCTTTCTCAAATGGTCTCCCTTTAACCAAGATCGATAGGGAAATGGATGCTGCTAGCATCAATCCGGGTGAGCAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccaaatcatggtttagatttctaatgttattttaacaagtgttttcctgattcagATTATTAGTACTGAGTGGGGGGCATTCTCAAATGGTCTACCTTTAACTGAGTTTGACAGAGATATGGATGCTGCTAGTATCAATCCTGGTGAGCAG
tgttttcct CT-rich tract
tttagatttctaatgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgaatctctaactagttaaagtgatgttccaaatcatggtttagatttctaatgttattttaacaagtgttttcctgattcagATTATTAGTACTGAGTGGGGGGCATTCTCAAATGGTCTACCTTTAACTGAGTTTGACAGAGATATGGATGCTGCTAGTATCAATCCTGGTGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG