1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgtttttgtttacattatttattaatttgaggcaagattattgttcctttgtgcaatacaggatgtgaaacttttttattttttttacccttcaaagtaagcatacatttgtcttgaataagaaaatggaagtatagaatttggtgattgtttttgcagGCCAGGCCCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGCTATGCT
species | Vitis vinifera |
transcript | Vv18s0001g12960.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGAAATGCCAAGTGTCTTGCTCATGGCAGCAGTTCGCAATGTTCAAATT GCCAGGCCCACTCTCTATCAAGTAATGAAAGAGATGATTGAEST: gi|27578891|gb|CB001586.1|CB001586
genomic: TGGAAATGCCAAGTGTCTTGCTCATGGCAGCAGTTCGCAATGTTCAAATTgtatgttttt ... gtttttgcagGCCAGGCCCACTCTCTATCAAGTAATGAAAGAGATGATTGA
EST: TGGAAATGCCAAGTGTCTTGCTCATGGCAGCAGTTCGCAATGTTCAAATT GCCAGGCCCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGCEST: gi|27581740|gb|CB004435.1|CB004435
genomic: TGGAAATGCCAAGTGTCTTGCTCATGGCAGCAGTTCGCAATGTTCAAATTgtatgttttt ... gtttttgcagGCCAGGCCCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGC
EST: TGGAAATGCCAAGTGTCTTGCTCATGGCAGCAGTTCGCAATGTTCAAATT GCCAGGCCCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGCEST: gi|27580870|gb|CB003565.1|CB003565
genomic: TGGAAATGCCAAGTGTCTTGCTCATGGCAGCAGTTCGCAATGTTCAAATTgtatgttttt ... gtttttgcagGCCAGGCCCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGC
EST: TGGAAATGCCAAGTGTCTTGCTCATGGCAGCAGTTCGCAATGTTCAAATT GCCAGGCCCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGCEST: gi|22007151|gb|BQ792185.1|BQ792185
genomic: TGGAAATGCCAAGTGTCTTGCTCATGGCAGCAGTTCGCAATGTTCAAATTgtatgttttt ... gtttttgcagGCCAGGCCCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGC
EST: TGGAAATGCCAAGTGTCTTGCTCATGGCAGCAGTTCGCAATGTTCAAATT GCCAGGCCCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGCEST: gi|26261297|gb|CA812360.1|CA812360
genomic: TGGAAATGCCAAGTGTCTTGCTCATGGCAGCAGTTCGCAATGTTCAAATTgtatgttttt ... gtttttgcagGCCAGGCCCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGC
EST: TGGAAATGCCAAGTGTCTTGCTCATGGCAGCAGTTCGCAATGTTCAAATT GCCAGGCCCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGCEST: gi|26260812|gb|CA811875.1|CA811875
genomic: TGGAAATGCCAAGTGTCTTGCTCATGGCAGCAGTTCGCAATGTTCAAATTgtatgttttt ... gtttttgcagGCCAGGCCCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGC
EST: TGGAAATGCCAAGTGTCTTGCTCATGGCAGCAGTTCGCAATGTTCAAATT GCCAGGCCCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGC
genomic: TGGAAATGCCAAGTGTCTTGCTCATGGCAGCAGTTCGCAATGTTCAAATTgtatgttttt ... gtttttgcagGCCAGGCCCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGC
acatttgtcttgaataagaaaatggaagtatagaatttggtgattgtttttgcagGCCAGGCCCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGCTATGCT
ttgttttt CT-rich tract
ttgaataagaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttttgtttacattatttattaatttgaggcaagattattgttcctttgtgcaatacaggatgtgaaacttttttattttttttacccttcaaagtaagcatacatttgtcttgaataagaaaatggaagtatagaatttggtgattgtttttgcagGCCAGGCCCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGCTATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG