Sequence
atgc intronic sequence ATGC exonic sequencegtcacttgttgcttcatttttcaatttctttttctagctctctctctctctcacacacacacacatcttttcctctctgtttttccttgttaccatgctttattgaaatacttgttaacagGTTGATGCCAGCATTTATTTGTGGAAATGGAACACTCGCATAGTAATCTCAGATGTTGATGGGACAATTACCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g10680.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA17G36130.1 (Glycine max), 3'ss of exon 4
gtcacttgttgcttcatttttcaatttctttttctagctctc---tctctctctcacacacacacacatcttttcctctctgtttttccttgttaccatgctttattgaaatacttgttaacagGTTGATGCCAGCATTTATTTGTGGAAATGGAACACTCGCATAGTAATCTCAGATGTTGATGGGACAATTACCAA
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gttagcaatcaataaatttcttcaattttatttcaagtgcgcaaggcttactttc-catttacatttattctgtttcttttattgatacttttaatttt--ttttttatttgtcttactatcagGTTGATGCTCACATGTATTTGTGGAAATGGAACACTCGTATAGTGATATCAGATGTAGATGGGACAATTACAAG
upper sequence: Vv18s0001g10680.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA06G04230.2 (Glycine max), 3'ss of exon 9
-------gtcacttgttgcttcatttttcaatttctttttctagctctctctctctctcacacacacacacatcttttcctctctg--tttttccttgttaccatgctttattgaa-atacttg-ttaacagGTTGATGCCAGCATTTATTTGTGGAAATGGAACACTCGCATAGTAATCTCAGATGTTGATGGGACAATTACCAA
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gtaaataatcatgagtttctatagttttattttaagaacatgaagtttacttctcgtttccttttatgtacatttcttctattgaaaactctcttctacctttatttcttattttttatgtttgactaacagGTTGACTGTCGAATCTATTTGTGGAAATGGAACACTCGTATAGTGATCTCAGATGTGGATGGTACAATTACAAG
upper sequence: Vv18s0001g10680.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA04G04060.1 (Glycine max), 3'ss of exon 8
-------gtcacttgttgcttcatttttcaatttctttttctagctctctctctctctcacacacacacacatcttttcctctctgtttttcct--tgttaccatgctttattgaa-atacttg-ttaacagGTTGATGCCAGCATTTATTTGTGGAAATGGAACACTCGCATAGTAATCTCAGATGTTGATGGGACAATTACCAA
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gtaaataatcatgaatttctataattttattttaagaacatgaagtttacttctcgtttccttttatgtacatttcttcaattgaaatctctcttctacttttattttttattttttatgtttgattaacagGTTGATTGTCGAATATATTTATGGAAATGGAACGCTCGTATAGTGATCTCAGATGTGGATGGTACAATTACAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714976|gb|FC063946.1|FC063946EST: GGAATACGATAACCTTTACATTCTCAACTGCAATGCTGGGGGAGCAGCAG GTTGATGCCAGCATTTATTTGTGGAAATGGA-CACTCGCATAGTA-TCTCA
genomic: GGAATACGATAACCTTTACATTCTCAACTGCAATGCTGGGGGAGCAGCAGgtcacttgtt ... ttgttaacagGTTGATGCCAGCATTTATTTGTGGAAATGGAACACTCGCATAGTAATCTCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttttcctctctgtttttccttgttaccatgctttattgaaatacttgttaacagGTTGATGCCAGCATTTATTTGTGGAAATGGAACACTCGCATAGTAATCTCAGATGTTGATGGGACAATTACCAA
tttattgaaatactt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcacttgttgcttcatttttcaatttctttttctagctctctctctctctcacacacacacacatcttttcctctctgtttttccttgttaccatgctttattgaaatacttgttaacagGTTGATGCCAGCATTTATTTGTGGAAATGGAACACTCGCATAGTAATCTCAGATGTTGATGGGACAATTACCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG