1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgatgagtttctctttattagaatttatttggccaggttttccatagacagtttgaggtttcctgagctaagtttgtgctttctttattgtttggagaagGAAGCTATACCAGTGGAGAAGCTTGTGAACATCCAAATTCCTCCAACACTGAAGAAGCAACTAGTTGATGATTGTGAATTCATTACTCATCTGGGCCAG
species | Vitis vinifera |
transcript | Vv18s0001g09710.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG GAAGCTATACCAGTGGAGAAGCTTGTGAACATCCAAATTCCTCCAACACTGEST: gi|71880779|gb|DT029834.1|DT029834
genomic: TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAGgtaaattctt ... tttggagaagGAAGCTATACCAGTGGAGAAGCTTGTGAACATCCAAATTCCTCCAACACTG
EST: TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG GAAGCTATACCAGTGGAGAAGCTTGTGAACATCCAAATTCCTCCAACACTGEST: gi|71859464|gb|DT008519.1|DT008519
genomic: TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAGgtaaattctt ... tttggagaagGAAGCTATACCAGTGGAGAAGCTTGTGAACATCCAAATTCCTCCAACACTG
EST: TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG GAAGCTATACCAGTGGAGAAGCTTGTGAACATCCAAATTCCTCCAACACTGEST: gi|27584092|gb|CB006787.1|CB006787
genomic: TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAGgtaaattctt ... tttggagaagGAAGCTATACCAGTGGAGAAGCTTGTGAACATCCAAATTCCTCCAACACTG
EST: TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG GAAGCTATACCAGTGGAGAAGCTTGTGAACATCCAAATTCCTCCAACACTGEST: gi|30303537|gb|CB980331.1|CB980331
genomic: TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAGgtaaattctt ... tttggagaagGAAGCTATACCAGTGGAGAAGCTTGTGAACATCCAAATTCCTCCAACACTG
EST: TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG GAAGCTATACCAGTGGAGAAGCTTGTGAACATCCAAATTCCTCCAACACTGEST: gi|71880624|gb|DT029679.1|DT029679
genomic: TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAGgtaaattctt ... tttggagaagGAAGCTATACCAGTGGAGAAGCTTGTGAACATCCAAATTCCTCCAACACTG
EST: TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG GAAGCTATACCAGTGGAGAAGCTTGTGAACATCCAAATTCCTCCAACACTGEST: gi|71877948|gb|DT027003.1|DT027003
genomic: TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAGgtaaattctt ... tttggagaagGAAGCTATACCAGTGGAGAAGCTTGTGAACATCCAAATTCCTCCAACACTG
EST: TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG GAAGCTATACCAGTGGAGAAGCTTGTGAACATCCAAATTCCTCCAACACTGEST: gi|30133633|gb|CB918972.1|CB918972
genomic: TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAGgtaaattctt ... tttggagaagGAAGCTATACCAGTGGAGAAGCTTGTGAACATCCAAATTCCTCCAACACTG
EST: GGAAGAATGACTGTGTCACTAAG GAAGCTATACCAGTGGAGAAGCTTGTGAACATCCAAATTCCTCCAACACTGEST: gi|71879457|gb|DT028512.1|DT028512
genomic: GGAAGAATGACTGTGTCACTAAGgtaaattctt ... tttggagaagGAAGCTATACCAGTGGAGAAGCTTGTGAACATCCAAATTCCTCCAACACTG
EST: TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG GAAGCTATACCAGTGGAGAAGCTTGTGAACATCCAAATTCCTCCAACACTGEST: gi|71878762|gb|DT027817.1|DT027817
genomic: TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAGgtaaattctt ... tttggagaagGAAGCTATACCAGTGGAGAAGCTTGTGAACATCCAAATTCCTCCAACACTG
EST: TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAG GAAGCTATACCAGTGGAGAAGCTTGTGAACATCCAAATTCCTCCCACACTG
genomic: TTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAGgtaaattctt ... tttggagaagGAAGCTATACCAGTGGAGAAGCTTGTGAACATCCAAATTCCTCCAACACTG
agacagtttgaggtttcctgagctaagtttgtgctttctttattgtttggagaagGAAGCTATACCAGTGGAGAAGCTTGTGAACATCCAAATTCCTCCAACACTGAAGAAGCAACTAGTTGATGATTGTGAATTCATTACTCATCTGGGCCAG
ctttctttattgttt CT-rich tract
tttctttattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatgagtttctctttattagaatttatttggccaggttttccatagacagtttgaggtttcctgagctaagtttgtgctttctttattgtttggagaagGAAGCTATACCAGTGGAGAAGCTTGTGAACATCCAAATTCCTCCAACACTGAAGAAGCAACTAGTTGATGATTGTGAATTCATTACTCATCTGGGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcctga