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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggatcttgtttctttttattttctttctgcttaaatttcattgaaagaaactactttctgacagtttttttctggaaatatttaatgcagGTGGCCGGCTAAATTGGATATGACAAAAAGGACTGATTTCCGGCATGTGAAATCAACATTTACTGGCACCCCACCACATAAA

Basic information

species Vitis vinifera
transcript Vv18s0001g09200.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110429379|gb|EC995870.1|EC995870
EST:     GTGGATTCGGATATTTGCAAGTATTTGAGTAACATGTCTGAACCTACAGA                         GTGGCCGGCTAAATTGGATATGACAAAAAGGACTGATTTCCGGCATGTGAA
genomic: GTGGATTCGGATATTTGCAAGTATTTGAGTAACATGTCTGAACCTACAGAgtaaggatct ... tttaatgcagGTGGCCGGCTAAATTGGATATGACAAAAAGGACTGATTTCCGGCATGTGAA
EST: gi|32268399|gb|CD717558.1|CD717558
EST:     GTGGATTCGGATATTTGCAAGTATTTGAGTAACATGTCTGAACCTACAGA                         GTGGCCGGCTAAATTGGATATGACAAAAAGGACTGATTTCCGGCATGTGAA
genomic: GTGGATTCGGATATTTGCAAGTATTTGAGTAACATGTCTGAACCTACAGAgtaaggatct ... tttaatgcagGTGGCCGGCTAAATTGGATATGACAAAAAGGACTGATTTCCGGCATGTGAA
EST: gi|32267865|gb|CD717024.1|CD717024
EST:     GTGGATTCGGATATTTGCAAGTATTTGAGTAACATGTCTGAACCTACAGA                         GTGGCCGGCTAAATTGGATATGACAAAAAGGACTGATTTCCGGCATGTGAA
genomic: GTGGATTCGGATATTTGCAAGTATTTGAGTAACATGTCTGAACCTACAGAgtaaggatct ... tttaatgcagGTGGCCGGCTAAATTGGATATGACAAAAAGGACTGATTTCCGGCATGTGAA
EST: gi|156737114|gb|EV241235.1|EV241235
EST:     GTGGATTCGGATATTTGCAAGTATTTGAGTAACATGTCTGAACCTACAGA                         GTGGCCGGCTAAATTGGATATGACAAAAAGGACTGATTTCCGGCATGTGAA
genomic: GTGGATTCGGATATTTGCAAGTATTTGAGTAACATGTCTGAACCTACAGAgtaaggatct ... tttaatgcagGTGGCCGGCTAAATTGGATATGACAAAAAGGACTGATTTCCGGCATGTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcattgaaagaaactactttctgacagtttttttctggaaatatttaatgcagGTGGCCGGCTAAATTGGATATGACAAAAAGGACTGATTTCCGGCATGTGAAATCAACATTTACTGGCACCCCACCACATAAA
                             tttttttctggaaata  TA-rich tract