1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgattcaacactggattaatctctcaatccattggtgacttaaattcttaaaacgcaattcttctgctctttggacagTTAGAAAATTACCAAGAAGAACTCGAAGAAATGAAGAACATGAGCCGCCAGGAATATGTTGCTCATCTGAGAAG
species | Vitis vinifera |
transcript | Vv18s0001g08610.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCTGGCGGCCCTCAAATACTGGGGACCTTCTACTCATATCAACTTCCCG TTAGAAAATTACCEST: gi|110700948|gb|EE078047.1|EE078047
genomic: ATCTGGCGGCCCTCAAATACTGGGGACCTTCTACTCATATCAACTTCCCGgtatgattca ... ctttggacagTTAGAAAATTACC
EST: ATCTGGCGGCCCTCAAATACTGGGGACCTTCTACTCATATCAACTTCCCG TTAGAAAATTACCAAGAAGAACTCGAAGAAATGAAGAACATGAGCCGCCAGEST: gi|110713874|gb|EE090177.1|EE090177
genomic: ATCTGGCGGCCCTCAAATACTGGGGACCTTCTACTCATATCAACTTCCCGgtatgattca ... ctttggacagTTAGAAAATTACCAAGAAGAACTCGAAGAAATGAAGAACATGAGCCGCCAG
EST: ATCTGGCGGCCCTCAAATACTGGGGACCTTCTACTCATATCAACTTCCCG TTAGAAAATTACCAAGAAGAACTCGAAGAAATGAAGAACATGAGCCGCCAG
genomic: ATCTGGCGGCCCTCAAATACTGGGGACCTTCTACTCATATCAACTTCCCGgtatgattca ... ctttggacagTTAGAAAATTACCAAGAAGAACTCGAAGAAATGAAGAACATGAGCCGCCAG
tcaatccattggtgacttaaattcttaaaacgcaattcttctgctctttggacagTTAGAAAATTACCAAGAAGAACTCGAAGAAATGAAGAACATGAGCCGCCAGGAATATGTTGCTCATCTGAGAAG
ttcttctgctcttt CT-rich tract
acttaaattcttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgattcaacactggattaatctctcaatccattggtgacttaaattcttaaaacgcaattcttctgctctttggacagTTAGAAAATTACCAAGAAGAACTCGAAGAAATGAAGAACATGAGCCGCCAGGAATATGTTGCTCATCTGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC