Sequence
atgc intronic sequence ATGC exonic sequence...agatgatatcttgtccttcattatacttactaattcatttcaaggaattagttttttatcattaaaaataataaaaaataaaaaacatttgctatttcagATCCAGGAAAGAACTTTGGGAAGCAAGGCTGCTGCAGAACTGCTGGAAAAACTGAAACCTTCCTACTGGTTTTCAGCTCACCTACACTGCAAATTTGCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g08180.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA06G06360.1 (Glycine max), 3'ss of exon 5
agatgatatcttgtccttcattatacttactaattcatttcaaggaattagttttttatcattaaaaataataaaaaataaaaaacatttgctatt-tcagATCCAGGAAAGAACTTTGGGAAGCAAGGCTGCTGCAGAACTGCTGGAAAAACTGAAACCTTCCTACTGGTTTTCAGCTCACCTACACTGCAAATTTGCTG
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tcataatcatttctagagcagt-catatagatattggtttttaattacactttatatcacaacacagtttcttatttctgtacctgatatatttttgccagATAGAGGAAAAAAGACTAGGTAGTAAACCTGCTGCTGAACTTCTAGAAAAATTGAAACCACATTATTGGTTTTCAGCTCACTTACACTGCAAATTTGCTA
upper sequence: Vv18s0001g08180.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA04G06310.1 (Glycine max), 3'ss of exon 3
agatgatatcttgtccttcattatacttactaattcatttcaaggaattagttttttatcattaaaaataataaaaaataaaaaac--atttgctatt-tcagATCCAGGAAAGAACTTTGGGAAGCAAGGCTGCTGCAGAACTGCTGGAAAAACTGAAACCTTCCTACTGGTTTTCAGCTCACCTACACTGCAAATTTGCTG
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---ttattattatttcttgagcagtcatatagatactggtttttaattacactttatataacgacacagtatcttatttctttacctgatatatttttgccagATAGAGGAAAAAAGACTAGGTAGTAAACCTGCTGCTGAACTTCTAGAAAAATTGAAACCACATTATTGGTTTTCAGCTCACTTACACTGCAAGTTTGCTG
upper sequence: Vv18s0001g08180.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT4G31770.1 (Arabidopsis thaliana), 3'ss of exon 4
agatgatatcttgtccttcattatacttactaattcatttcaaggaattagttttttatcattaaaaataataaaaaataaaaaacatttgctatttcagATCCAGGAAAGAACTTTGGGAAGCAAGGCTGCTGCAGAACTGCTGGAAAAACTGAAACCTTCCTACTGGTTTTCAGCTCACCTACACTGCAAATTTGCTG
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------------gtaaatctgtgggaacatgattctacttcttcattttggttttgagaggttttcaattg----atttgaccaaaatttatta---cagATCGAGGAAAAAACTCTTGGAAGTAAACCAGCGGCTCTACTGCTAGAAAAACTGAAGCCTCAATATTGGTTTTCAGCTCATTTACATTGCAAATTTGCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattagttttttatcattaaaaataataaaaaataaaaaacatttgctatttcagATCCAGGAAAGAACTTTGGGAAGCAAGGCTGCTGCAGAACTGCTGGAAAAACTGAAACCTTCCTACTGGTTTTCAGCTCACCTACACTGCAAATTTGCTG
ctatttc CT-rich tract
ttttttatcattaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agatgatatcttgtccttcattatacttactaattcatttcaaggaattagttttttatcattaaaaataataaaaaataaaaaacatttgctatttcagATCCAGGAAAGAACTTTGGGAAGCAAGGCTGCTGCAGAACTGCTGGAAAAACTGAAACCTTCCTACTGGTTTTCAGCTCACCTACACTGCAAATTTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - ccttcat
- - - - - - - - - - - - - - - - - - - - caaggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaca