1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...tttgtttaaatcatttatctatttgtccgctcccacgtaaagagacatatttctgaacaccaactttatttaaagcttatttatttattttttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGGCATTATTAAAACCTCATGAGAGAATCATGGCACTTGATCTTCCTCATGG
species | Vitis vinifera |
transcript | Vv18s0001g07960.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAG TCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGGEST: gi|352795184|gb|FQ477294.1|FQ477294
genomic: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAGgtaaacgaac ... tttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGG
EST: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAG TCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACTGEST: gi|71862434|gb|DT011489.1|DT011489
genomic: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAGgtaaacgaac ... tttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGG
EST: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAG TCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACTGEST: gi|71855735|gb|DT004790.1|DT004790
genomic: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAGgtaaacgaac ... tttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGG
EST: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAG TCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACTGEST: gi|71854985|gb|DT004040.1|DT004040
genomic: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAGgtaaacgaac ... tttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGG
EST: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAG TCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTEST: gi|71858517|gb|DT007572.1|DT007572
genomic: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAGgtaaacgaac ... tttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTT
EST: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAG TCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTTCAAGCTTTACACEST: gi|71857493|gb|DT006548.1|DT006548
genomic: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAGgtaaacgaac ... tttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTT-CAAGCTT-ACAC
EST: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAG TCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACTGEST: gi|71858780|gb|DT007835.1|DT007835
genomic: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAGgtaaacgaac ... tttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGG
EST: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAG TCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACEST: gi|71854655|gb|DT003710.1|DT003710
genomic: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAGgtaaacgaac ... tttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACAC
EST: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAG TCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACAEST: gi|161708846|gb|FC059632.1|FC059632
genomic: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAGgtaaacgaac ... tttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACA
EST: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAG TCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACTGEST: gi|352781776|gb|FQ469074.1|FQ469074
genomic: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAGgtaaacgaac ... tttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGG
EST: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAG TCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGGEST: gi|110359383|gb|EC920779.1|EC920779
genomic: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAGgtaaacgaac ... tttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGG
EST: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAG TCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACTGEST: gi|71858467|gb|DT007522.1|DT007522
genomic: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAGgtaaacgaac ... tttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGG
EST: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAG TCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACTGEST: gi|294966030|gb|GW837397.1|GW837397
genomic: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAGgtaaacgaac ... tttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGG
EST: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAG TCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACTGEST: gi|71855977|gb|DT005032.1|DT005032
genomic: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAGgtaaacgaac ... tttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGG
EST: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAG TCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCCAGCTTACACTGEST: gi|71857388|gb|DT006443.1|DT006443
genomic: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAGgtaaacgaac ... tttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGG
EST: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAG TCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACTGEST: gi|352764283|gb|FQ471263.1|FQ471263
genomic: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAGgtaaacgaac ... tttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGG
EST: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAG TCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGGEST: gi|352768688|gb|FQ467900.1|FQ467900
genomic: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAGgtaaacgaac ... tttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGG
EST: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAG TCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGGEST: gi|71858984|gb|DT008039.1|DT008039
genomic: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAGgtaaacgaac ... tttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGG
EST: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAG TCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACTGEST: gi|71859287|gb|DT008342.1|DT008342
genomic: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAGgtaaacgaac ... tttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGG
EST: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAG TCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACTGEST: gi|161713667|gb|FC062807.1|FC062807
genomic: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAGgtaaacgaac ... tttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGG
EST: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAG TCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACTGEST: gi|352765325|gb|FQ466022.1|FQ466022
genomic: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAGgtaaacgaac ... tttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGG
EST: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAG TCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACCCGGEST: gi|71856061|gb|DT005116.1|DT005116
genomic: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAGgtaaacgaac ... tttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGG
EST: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAG TCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACTGEST: gi|71857262|gb|DT006317.1|DT006317
genomic: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAGgtaaacgaac ... tttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGG
EST: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAG TCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACTG
genomic: TCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAGgtaaacgaac ... tttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGG
catatttctgaacaccaactttatttaaagcttatttatttattttttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGGCATTATTAAAACCTCATGAGAGAATCATGGCACTTGATCTTCCTCATGG
tttatttatttttttt CT-rich tract
accaactttatttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgtttaaatcatttatctatttgtccgctcccacgtaaagagacatatttctgaacaccaactttatttaaagcttatttatttattttttttggcagTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGGCATTATTAAAACCTCATGAGAGAATCATGGCACTTGATCTTCCTCATGG
- - - -aaatcat
- - - - - - - - - - - - - -cgctccc
- - - - - - - - - - - - - - - - - - - aaagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - acaccaa