1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctgtactgccatcaggatctttggaatttgcttgaaatcatctagcaccatggatttaacttataatttcacgtggtgtttgtttggaatctgccagaagGGATGCTAGGGCAGCTGAAAGAGAGCAAGGTGGGCGGAGAAGGCCACCACAGGAGTTTTCACAGAGACGTGTTCTATTCACCATTGCAATAACAGGCATT
species | Vitis vinifera |
transcript | Vv18s0001g07860.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTCTCATACGATAGTGTTGGTGTACCTGATAATACTGTCAGTCCTTCCAG AEST: gi|110429754|gb|EC996258.1|EC996258
genomic: GTCTCATACGATAGTGTTGGTGTACCTGATAATACTGTCAGTCCTTCCAGgtagatggtc ... ctgccagaag-
EST: GTCTCATACGATAGTGTTGGTGTACCTGATAATACTGTCAGTCCTTCCAG AEST: gi|110429754|gb|EC996258.1|EC996258
genomic: GTCTCATACGATAGTGTTGGTGTACCTGATAATACTGTCAGTCCTTCCAGgtagatggtc ... ctgccagaag-
EST: GTCTCATACGATAGTGTTGGTGTACCTGATAATACTGTCAGTCCTTCCAG AEST: gi|34318891|gb|CF371645.1|CF371645
genomic: GTCTCATACGATAGTGTTGGTGTACCTGATAATACTGTCAGTCCTTCCAGgtagatggtc ... ctgccagaag-
EST: GTCTCATACGATAGTGTTGGTGTACCTGATAATACTGTCAGTCCTTCCAGAAGEST: gi|110707795|gb|EE084604.1|EE084604
genomic: GTCTCATACGATAGTGTTGGTGTACCTGATAATACTGTCAGTCCTTCC---AGgtagatggtc ... ctgccaga
EST: GTCTCATACGATAGTGTTGGTGTACCTGATAATACTGTCAGTCCTTCCAG AEST: gi|110707795|gb|EE084604.1|EE084604
genomic: GTCTCATACGATAGTGTTGGTGTACCTGATAATACTGTCAGTCCTTCCAGgtagatggtc ... ctgccagaag-
EST: GTCTCATACGATAGTGTTGGTGTACCTGATAATACTGTCAGTCCTTCCAG AEST: gi|110707795|gb|EE084604.1|EE084604
genomic: GTCTCATACGATAGTGTTGGTGTACCTGATAATACTGTCAGTCCTTCCAGgtagatggtc ... ctgccagaag-
EST: GTCTCATACGATAGTGTTGGTGTACCTGATAATACTGTCAGTCCTTCCAG A
genomic: GTCTCATACGATAGTGTTGGTGTACCTGATAATACTGTCAGTCCTTCCAGgtagatggtc ... ctgccagaag-
caccatggatttaacttataatttcacgtggtgtttgtttggaatctgccagaagGGATGCTAGGGCAGCTGAAAGAGAGCAAGGTGGGCGGAGAAGGCCACCACAGGAGTTTTCACAGAGACGTGTTCTATTCACCATTGCAATAACAGGCATT
atttaac putative branch site (score: 3)
atttaacttataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtactgccatcaggatctttggaatttgcttgaaatcatctagcaccatggatttaacttataatttcacgtggtgtttgtttggaatctgccagaagGGATGCTAGGGCAGCTGAAAGAGAGCAAGGTGGGCGGAGAAGGCCACCACAGGAGTTTTCACAGAGACGTGTTCTATTCACCATTGCAATAACAGGCATT
- - - -gccatca
- - - - - - - - - - - - - -ttgcttg
- - - - - - - - - - - - - - - - - aaatcat
- - - - - - - - - - - - - - - - - - - - - - - -ccatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacgtgg